Gene annotation
Transcriptome id Sobic.006G243400.1
Synonym EDA9, Sb06g030920
Functional annotation D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
UniProt C5Y949
Pfam PF01842 PF07991 PF00389
Panther DB PTHR10996 PTHR10996:SF159
NCBI CDD -
KEGG Orthology K00058; serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
Gene Ontology GO:0016597; amino acid binding GO:0008152metabolic process GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT4G34200 : D-3-phosphoglycerate dehydrogenase
RAP-DB (Rice) LOC_Os04g55720.1 : D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a009508 , Zm00025a057226 , Zm00025a005822
Brachypodium KQK13007 , KQJ85000
Barley HORVU5Hr1G057400.1 , HORVU2Hr1G113180.4 , HORVU2Hr1G113180.2 , HORVU2Hr1G113180.3 , HORVU2Hr1G113180.1
Wheat TraesCS2A02G508900
Populus PNT57456 , PNT57455


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cDNA sequences
Sobic.006G243400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
2 Sobic.001G214900 expressed protein -
3 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
4 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
5 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
6 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
7 Sobic.006G017100 ribosomal L18p/L5e family protein, putative, expressed -
8 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
9 Sobic.010G125100 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
10 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
11 Sobic.007G171200 dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
12 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
13 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
14 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
15 Sobic.009G104100 peptidase, M24 family protein, putative, expressed -
16 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
17 Sobic.005G105500 expressed protein -
18 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
19 Sobic.001G493400 nucleic acid binding protein, putative, expressed -
20 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G243400 Sobic006G243400 Sobic007G143000 Sobic007G143000 Sobic006G243400--Sobic007G143000 Sobic001G214900 Sobic001G214900 Sobic006G243400--Sobic001G214900 Sobic003G160900 Sobic003G160900 Sobic006G243400--Sobic003G160900 Sobic006G157000 Sobic006G157000 Sobic006G243400--Sobic006G157000 Sobic010G018000 Sobic010G018000 Sobic006G243400--Sobic010G018000 Sobic001G481700 Sobic001G481700 Sobic006G243400--Sobic001G481700 Sobic006G017100 Sobic006G017100 Sobic006G243400--Sobic006G017100 Sobic010G134100 Sobic010G134100 Sobic006G243400--Sobic010G134100 Sobic010G125100 Sobic010G125100 Sobic006G243400--Sobic010G125100 Sobic002G045100 Sobic002G045100 Sobic007G143000--Sobic002G045100 Sobic007G143000--Sobic001G214900 Sobic007G143000--Sobic003G160900 Sobic004G248900 Sobic004G248900 Sobic007G143000--Sobic004G248900 Sobic007G143000--Sobic006G243400 Sobic007G143000--Sobic010G018000 Sobic007G034400 Sobic007G034400 Sobic007G143000--Sobic007G034400 Sobic003G326900 Sobic003G326900 Sobic007G143000--Sobic003G326900 Sobic005G164700 Sobic005G164700 Sobic007G143000--Sobic005G164700 Sobic001G060300 Sobic001G060300 Sobic001G214900--Sobic001G060300 Sobic002G367800 Sobic002G367800 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic003G205400 Sobic003G205400 Sobic001G214900--Sobic003G205400 Sobic001G214900--Sobic010G134100 Sobic010G277000 Sobic010G277000 Sobic001G214900--Sobic010G277000 Sobic001G214900--Sobic007G143000 Sobic002G402500 Sobic002G402500 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G287300 Sobic003G287300 Sobic003G160900--Sobic003G287300 Sobic003G160900--Sobic001G481700 Sobic001G117400 Sobic001G117400 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic004G002350 Sobic004G002350 Sobic003G160900--Sobic004G002350 Sobic009G211700 Sobic009G211700 Sobic003G160900--Sobic009G211700 Sobic001G091900 Sobic001G091900 Sobic003G160900--Sobic001G091900 Sobic003G309300 Sobic003G309300 Sobic006G157000--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic010G216300 Sobic010G216300 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G010400 Sobic006G010400 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic007G114000 Sobic007G114000 Sobic006G157000--Sobic007G114000 Sobic010G018000--Sobic003G326900 Sobic001G129400 Sobic001G129400 Sobic010G018000--Sobic001G129400 Sobic003G003000 Sobic003G003000 Sobic010G018000--Sobic003G003000 Sobic010G018000--Sobic007G034400 Sobic010G018000--Sobic007G143000 Sobic010G018000--Sobic002G045100 Sobic003G367900 Sobic003G367900 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic004G213200 Sobic004G213200 Sobic006G017100--Sobic004G213200 Sobic004G138800 Sobic004G138800 Sobic006G017100--Sobic004G138800 Sobic002G255100 Sobic002G255100 Sobic006G017100--Sobic002G255100 Sobic006G017100--Sobic001G481700 Sobic006G017100--Sobic003G160900 Sobic009G212300 Sobic009G212300 Sobic006G017100--Sobic009G212300 Sobic001G505500 Sobic001G505500 Sobic006G017100--Sobic001G505500 Sobic003G308000 Sobic003G308000 Sobic006G017100--Sobic003G308000 Sobic010G038700 Sobic010G038700 Sobic006G017100--Sobic010G038700 Sobic001G167500 Sobic001G167500 Sobic010G134100--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic010G134100--Sobic001G413100 Sobic001G176900 Sobic001G176900 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic004G356300 Sobic004G356300 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic009G041800 Sobic009G041800 Sobic010G134100--Sobic009G041800 Sobic004G082700 Sobic004G082700 Sobic010G134100--Sobic004G082700 Sobic007G171200 Sobic007G171200 Sobic010G125100--Sobic007G171200 Sobic010G125100--Sobic001G413100 Sobic001G081900 Sobic001G081900 Sobic010G125100--Sobic001G081900 Sobic010G125100--Sobic001G167500 Sobic002G101000 Sobic002G101000 Sobic010G125100--Sobic002G101000 Sobic010G125100--Sobic010G134100 Sobic010G125100--Sobic007G220900 Sobic008G083400 Sobic008G083400 Sobic010G125100--Sobic008G083400 Sobic010G125100--Sobic006G157000
Octagon: transcription factors


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