Gene annotation
Transcriptome id Sobic.001G493400.2,Sobic.001G493400.3
Synonym Sb01g046110
Functional annotation nucleic acid binding protein, putative, expressed
UniProt A0A1Z5SB68 , A0A1B6QQB4
Pfam PF01918
Panther DB PTHR13516 PTHR13516:SF7
NCBI CDD KOG2567; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G07030 : Alba DNA/RNA-binding protein
RAP-DB (Rice) LOC_Os03g06980.1 : nucleic acid binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a053467
Brachypodium KQK23465
Barley HORVU4Hr1G074450.7 , HORVU4Hr1G074450.5 , HORVU4Hr1G074450.2 , HORVU4Hr1G074450.3 , HORVU4Hr1G074450.1 , HORVU4Hr1G074450.6 , HORVU4Hr1G074450.4
Wheat TraesCS4B02G281900 , TraesCS4B02G281900 , TraesCS4A02G021600 , TraesCS4A02G021600 , TraesCS4D02G280500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
2 Sobic.004G002500 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
3 Sobic.001G214900 expressed protein -
4 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
5 Sobic.004G082700 PPR repeat containing protein, expressed -
6 Sobic.007G108100 co-chaperone protein SBA1, putative, expressed -
7 Sobic.006G254300 RCC2, putative, expressed -
8 Sobic.001G228200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
9 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
10 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
11 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
12 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
13 Sobic.003G279800 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
14 Sobic.006G243400 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
15 Sobic.001G413100 nucleotide binding protein, putative, expressed -
16 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
17 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
18 Sobic.003G248300 kinase, pfkB family, putative, expressed K00852: rbsK, ribokinase
19 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
20 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL


Gene co-expression network
sample Sobic001G493400 Sobic001G493400 Sobic010G134100 Sobic010G134100 Sobic001G493400--Sobic010G134100 Sobic004G002500 Sobic004G002500 Sobic001G493400--Sobic004G002500 Sobic001G214900 Sobic001G214900 Sobic001G493400--Sobic001G214900 Sobic001G167500 Sobic001G167500 Sobic001G493400--Sobic001G167500 Sobic004G082700 Sobic004G082700 Sobic001G493400--Sobic004G082700 Sobic007G108100 Sobic007G108100 Sobic001G493400--Sobic007G108100 Sobic006G254300 Sobic006G254300 Sobic001G493400--Sobic006G254300 Sobic001G228200 Sobic001G228200 Sobic001G493400--Sobic001G228200 Sobic001G371100 Sobic001G371100 Sobic001G493400--Sobic001G371100 Sobic010G134100--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic010G134100--Sobic001G413100 Sobic001G176900 Sobic001G176900 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic010G134100--Sobic001G493400 Sobic004G356300 Sobic004G356300 Sobic010G134100--Sobic004G356300 Sobic002G367800 Sobic002G367800 Sobic010G134100--Sobic002G367800 Sobic009G041800 Sobic009G041800 Sobic010G134100--Sobic009G041800 Sobic010G134100--Sobic004G082700 Sobic001G011000 Sobic001G011000 Sobic004G002500--Sobic001G011000 Sobic004G002500--Sobic010G134100 Sobic004G002500--Sobic001G493400 Sobic004G212100 Sobic004G212100 Sobic004G002500--Sobic004G212100 Sobic004G002500--Sobic002G367800 Sobic004G002500--Sobic001G214900 Sobic003G388900 Sobic003G388900 Sobic004G002500--Sobic003G388900 Sobic004G002500--Sobic004G356300 Sobic003G396800 Sobic003G396800 Sobic004G002500--Sobic003G396800 Sobic001G060300 Sobic001G060300 Sobic001G214900--Sobic001G060300 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic003G205400 Sobic003G205400 Sobic001G214900--Sobic003G205400 Sobic001G214900--Sobic010G134100 Sobic010G277000 Sobic010G277000 Sobic001G214900--Sobic010G277000 Sobic007G143000 Sobic007G143000 Sobic001G214900--Sobic007G143000 Sobic002G402500 Sobic002G402500 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800 Sobic001G167500--Sobic010G134100 Sobic001G167500--Sobic001G413100 Sobic001G167500--Sobic009G041800 Sobic001G167500--Sobic002G367800 Sobic001G167500--Sobic001G176900 Sobic003G130000 Sobic003G130000 Sobic001G167500--Sobic003G130000 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G167500--Sobic001G214900 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic004G082700--Sobic001G167500 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic001G008500 Sobic001G008500 Sobic004G082700--Sobic001G008500 Sobic004G082700--Sobic001G493400 Sobic010G001800 Sobic010G001800 Sobic007G108100--Sobic010G001800 Sobic010G018000 Sobic010G018000 Sobic007G108100--Sobic010G018000 Sobic003G011100 Sobic003G011100 Sobic007G108100--Sobic003G011100 Sobic003G211100 Sobic003G211100 Sobic007G108100--Sobic003G211100 Sobic002G045100 Sobic002G045100 Sobic007G108100--Sobic002G045100 Sobic009G012700 Sobic009G012700 Sobic007G108100--Sobic009G012700 Sobic007G108100--Sobic001G493400 Sobic007G108100--Sobic001G530800 Sobic009G211700 Sobic009G211700 Sobic007G108100--Sobic009G211700 Sobic006G254300--Sobic001G493400 Sobic002G313600 Sobic002G313600 Sobic006G254300--Sobic002G313600 Sobic001G131600 Sobic001G131600 Sobic006G254300--Sobic001G131600 Sobic001G382700 Sobic001G382700 Sobic006G254300--Sobic001G382700 Sobic006G254300--Sobic010G134100 Sobic009G214100 Sobic009G214100 Sobic006G254300--Sobic009G214100 Sobic010G277300 Sobic010G277300 Sobic006G254300--Sobic010G277300 Sobic008G113800 Sobic008G113800 Sobic006G254300--Sobic008G113800 Sobic010G178600 Sobic010G178600 Sobic006G254300--Sobic010G178600 Sobic008G168100 Sobic008G168100 Sobic001G228200--Sobic008G168100 Sobic009G059500 Sobic009G059500 Sobic001G228200--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic001G228200--Sobic002G186900 Sobic001G228200--Sobic001G371100 Sobic003G146800 Sobic003G146800 Sobic001G228200--Sobic003G146800 Sobic001G397000 Sobic001G397000 Sobic001G228200--Sobic001G397000 Sobic007G113300 Sobic007G113300 Sobic001G228200--Sobic007G113300 Sobic002G280700 Sobic002G280700 Sobic001G228200--Sobic002G280700 Sobic004G326600 Sobic004G326600 Sobic001G228200--Sobic004G326600 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G371100--Sobic001G397000 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200
Octagon: transcription factors


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