Gene annotation
Transcriptome id Sobic.001G228200.1
Synonym Sb01g020010, HSP60, HSP60-3B
Functional annotation T-complex protein, putative, expressed
UniProt C5WZF2
Pfam PF00118
Panther DB PTHR11353 PTHR11353:SF80
NCBI CDD -
KEGG Orthology K04077; groEL, chaperonin GroEL
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT3G23990 : heat shock protein 60
RAP-DB (Rice) LOC_Os10g32550.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a017688 , Zm00025a006693
Brachypodium KQJ96977 , KQK23701 , KQK23702
Barley HORVU4Hr1G078820.3 , HORVU4Hr1G078820.2 , HORVU4Hr1G078820.1 , HORVU4Hr1G078820.7 , HORVU4Hr1G078820.6 , HORVU4Hr1G078820.5 , HORVU4Hr1G078820.4 , HORVU4Hr1G078820.9 , HORVU4Hr1G078820.8 , HORVU7Hr1G070740.1 , HORVU1Hr1G038680.1 , HORVU1Hr1G038680.6 , HORVU1Hr1G038680.7 , HORVU1Hr1G038680.4 , HORVU1Hr1G038680.5 , HORVU1Hr1G038680.2 , HORVU1Hr1G038680.3 , HORVU1Hr1G038680.8 , HORVU1Hr1G038680.9 , HORVU4Hr1G078820.13 , HORVU4Hr1G078820.11 , HORVU4Hr1G078820.10 , HORVU4Hr1G078820.17 , HORVU4Hr1G078820.16 , HORVU4Hr1G078820.15 , HORVU4Hr1G078820.14 , HORVU4Hr1G078820.19 , HORVU4Hr1G078820.18 , HORVU1Hr1G038680.18 , HORVU1Hr1G038680.19 , HORVU1Hr1G038680.14 , HORVU1Hr1G038680.15 , HORVU1Hr1G038680.16 , HORVU1Hr1G038680.17 , HORVU1Hr1G038680.10 , HORVU1Hr1G038680.11 , HORVU1Hr1G038680.12 , HORVU1Hr1G038680.13
Wheat TraesCS4D02G305900 , TraesCS1D02G144000 , TraesCS1D02G144000 , TraesCS4A02G409100 , TraesCS4B02G307700 , TraesCS4B02G307700 , TraesCS1A02G145000 , TraesCS1B02G162300
Populus PNT46134 , PNT46133


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cDNA sequences
Sobic.001G228200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G168100 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
2 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
3 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
4 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
5 Sobic.003G146800 folic acid synthesis protein, putative, expressed K13941: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase
6 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
7 Sobic.007G113300 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
8 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
9 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
10 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
11 Sobic.004G054000 expressed protein -
12 Sobic.002G271300 NC domain-containing protein, putative, expressed -
13 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
14 Sobic.007G152900 POLE2A - Putative DNA polymerase epsilon complex subunit, expressed K02325: DNA polymerase epsilon subunit 2
15 Sobic.010G144900 fiber protein Fb34, putative, expressed -
16 Sobic.003G279800 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
17 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
18 Sobic.008G062900 H-BTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
19 Sobic.003G306900 deoxycytidylate deaminase, putative, expressed K01493: dCMP deaminase
20 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic001G228200 Sobic001G228200 Sobic008G168100 Sobic008G168100 Sobic001G228200--Sobic008G168100 Sobic009G059500 Sobic009G059500 Sobic001G228200--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic001G228200--Sobic002G186900 Sobic001G371100 Sobic001G371100 Sobic001G228200--Sobic001G371100 Sobic003G146800 Sobic003G146800 Sobic001G228200--Sobic003G146800 Sobic001G397000 Sobic001G397000 Sobic001G228200--Sobic001G397000 Sobic007G113300 Sobic007G113300 Sobic001G228200--Sobic007G113300 Sobic002G280700 Sobic002G280700 Sobic001G228200--Sobic002G280700 Sobic004G326600 Sobic004G326600 Sobic001G228200--Sobic004G326600 Sobic008G168100--Sobic009G059500 Sobic008G168100--Sobic001G228200 Sobic004G054000 Sobic004G054000 Sobic008G168100--Sobic004G054000 Sobic003G294100 Sobic003G294100 Sobic008G168100--Sobic003G294100 Sobic002G271300 Sobic002G271300 Sobic008G168100--Sobic002G271300 Sobic009G250100 Sobic009G250100 Sobic008G168100--Sobic009G250100 Sobic008G126600 Sobic008G126600 Sobic008G168100--Sobic008G126600 Sobic002G094600 Sobic002G094600 Sobic008G168100--Sobic002G094600 Sobic007G152900 Sobic007G152900 Sobic008G168100--Sobic007G152900 Sobic009G059500--Sobic008G168100 Sobic009G059500--Sobic002G271300 Sobic009G059500--Sobic002G186900 Sobic009G059500--Sobic008G126600 Sobic009G059500--Sobic003G294100 Sobic008G141200 Sobic008G141200 Sobic009G059500--Sobic008G141200 Sobic009G059500--Sobic001G228200 Sobic009G059500--Sobic004G054000 Sobic007G044400 Sobic007G044400 Sobic009G059500--Sobic007G044400 Sobic002G186900--Sobic009G059500 Sobic002G186900--Sobic002G271300 Sobic003G096000 Sobic003G096000 Sobic002G186900--Sobic003G096000 Sobic010G089500 Sobic010G089500 Sobic002G186900--Sobic010G089500 Sobic010G101600 Sobic010G101600 Sobic002G186900--Sobic010G101600 Sobic004G056400 Sobic004G056400 Sobic002G186900--Sobic004G056400 Sobic002G186900--Sobic001G228200 Sobic006G200000 Sobic006G200000 Sobic002G186900--Sobic006G200000 Sobic002G186900--Sobic007G044400 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200 Sobic003G146800--Sobic001G228200 Sobic003G146800--Sobic002G186900 Sobic007G139500 Sobic007G139500 Sobic003G146800--Sobic007G139500 Sobic003G146800--Sobic002G271300 Sobic003G146800--Sobic001G397000 Sobic003G146800--Sobic009G059500 Sobic001G432300 Sobic001G432300 Sobic003G146800--Sobic001G432300 Sobic003G146800--Sobic010G032700 Sobic001G392200 Sobic001G392200 Sobic003G146800--Sobic001G392200 Sobic001G397000--Sobic001G371100 Sobic003G300900 Sobic003G300900 Sobic001G397000--Sobic003G300900 Sobic003G396600 Sobic003G396600 Sobic001G397000--Sobic003G396600 Sobic007G134800 Sobic007G134800 Sobic001G397000--Sobic007G134800 Sobic010G144900 Sobic010G144900 Sobic001G397000--Sobic010G144900 Sobic008G100700 Sobic008G100700 Sobic001G397000--Sobic008G100700 Sobic001G397000--Sobic001G081900 Sobic002G101000 Sobic002G101000 Sobic001G397000--Sobic002G101000 Sobic001G397000--Sobic001G228200 Sobic004G233700 Sobic004G233700 Sobic007G113300--Sobic004G233700 Sobic002G218600 Sobic002G218600 Sobic007G113300--Sobic002G218600 Sobic007G113300--Sobic008G100700 Sobic001G304800 Sobic001G304800 Sobic007G113300--Sobic001G304800 Sobic004G286700 Sobic004G286700 Sobic007G113300--Sobic004G286700 Sobic010G067800 Sobic010G067800 Sobic007G113300--Sobic010G067800 Sobic010G103700 Sobic010G103700 Sobic007G113300--Sobic010G103700 Sobic003G179500 Sobic003G179500 Sobic007G113300--Sobic003G179500 Sobic008G090000 Sobic008G090000 Sobic007G113300--Sobic008G090000 Sobic009G088200 Sobic009G088200 Sobic002G280700--Sobic009G088200 Sobic001G528600 Sobic001G528600 Sobic002G280700--Sobic001G528600 Sobic002G280700--Sobic007G152900 Sobic002G280700--Sobic010G032700 Sobic002G280700--Sobic003G396600 Sobic002G280700--Sobic001G371100 Sobic002G280700--Sobic003G294100 Sobic005G164700 Sobic005G164700 Sobic002G280700--Sobic005G164700 Sobic002G280700--Sobic001G397000 Sobic004G326600--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic004G326600--Sobic002G014400 Sobic002G423500 Sobic002G423500 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic002G341800 Sobic002G341800 Sobic004G326600--Sobic002G341800 Sobic005G163700 Sobic005G163700 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700
Octagon: transcription factors


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