Gene annotation
Transcriptome id Sobic.003G306900.1,Sobic.003G306900.2,Sobic.003G306900.3
Synonym Sb03g035540
Functional annotation deoxycytidylate deaminase, putative, expressed
UniProt A0A1W0VZR1 , C5XKW9 , A0A1W0VZN9
Pfam PF00383
Panther DB PTHR11086:SF18 PTHR11086 PTHR11086 PTHR11086:SF18
NCBI CDD KOG3127; Deoxycytidylate deaminase
KEGG Orthology K01493; dCMP deaminase
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G48540 : Cytidine/deoxycytidylate deaminase family protein
RAP-DB (Rice) LOC_Os01g55974.1 : deoxycytidylate deaminase, putative, expressed
MaizeGDB (Corn) Zm00025a039945
Brachypodium KQK09909 , KQK09908
Barley HORVU3Hr1G074280.8 , HORVU3Hr1G074280.4 , HORVU3Hr1G074280.5 , HORVU3Hr1G074280.6 , HORVU3Hr1G074280.7 , HORVU3Hr1G074280.1 , HORVU3Hr1G074280.2
Wheat TraesCS3D02G300900 , TraesCS3A02G300900 , TraesCS3B02G335600
Populus -


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cDNA sequences
Sobic.003G306900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
2 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
3 Sobic.001G228200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
4 Sobic.010G144900 fiber protein Fb34, putative, expressed -
5 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
6 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
7 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
8 Sobic.007G113300 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
9 Sobic.002G159900 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
10 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
11 Sobic.009G043500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfite oxidase, putative, expressed K00387: sulfite oxidase
12 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
13 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
14 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
15 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
16 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
17 Sobic.004G330600 GHMP kinases ATP-binding protein, putative, expressed K01597: MVD, diphosphomevalonate decarboxylase
18 Sobic.008G168100 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
19 Sobic.008G100700 SSXT protein, putative, expressed -
20 Sobic.002G303800 expressed protein -


Gene co-expression network
sample Sobic003G306900 Sobic003G306900 Sobic010G252700 Sobic010G252700 Sobic003G306900--Sobic010G252700 Sobic001G371100 Sobic001G371100 Sobic003G306900--Sobic001G371100 Sobic001G228200 Sobic001G228200 Sobic003G306900--Sobic001G228200 Sobic010G144900 Sobic010G144900 Sobic003G306900--Sobic010G144900 Sobic002G280700 Sobic002G280700 Sobic003G306900--Sobic002G280700 Sobic001G397000 Sobic001G397000 Sobic003G306900--Sobic001G397000 Sobic002G186900 Sobic002G186900 Sobic003G306900--Sobic002G186900 Sobic007G113300 Sobic007G113300 Sobic003G306900--Sobic007G113300 Sobic002G159900 Sobic002G159900 Sobic003G306900--Sobic002G159900 Sobic008G179000 Sobic008G179000 Sobic010G252700--Sobic008G179000 Sobic007G123100 Sobic007G123100 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic002G362200 Sobic002G362200 Sobic010G252700--Sobic002G362200 Sobic001G149100 Sobic001G149100 Sobic010G252700--Sobic001G149100 Sobic008G031200 Sobic008G031200 Sobic010G252700--Sobic008G031200 Sobic008G090000 Sobic008G090000 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200 Sobic008G168100 Sobic008G168100 Sobic001G228200--Sobic008G168100 Sobic009G059500 Sobic009G059500 Sobic001G228200--Sobic009G059500 Sobic001G228200--Sobic002G186900 Sobic001G228200--Sobic001G371100 Sobic003G146800 Sobic003G146800 Sobic001G228200--Sobic003G146800 Sobic001G228200--Sobic001G397000 Sobic001G228200--Sobic007G113300 Sobic001G228200--Sobic002G280700 Sobic004G326600 Sobic004G326600 Sobic001G228200--Sobic004G326600 Sobic009G189200 Sobic009G189200 Sobic010G144900--Sobic009G189200 Sobic006G104100 Sobic006G104100 Sobic010G144900--Sobic006G104100 Sobic010G144900--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic010G144900--Sobic006G120700 Sobic010G144900--Sobic009G059500 Sobic010G144900--Sobic002G186900 Sobic007G044400 Sobic007G044400 Sobic010G144900--Sobic007G044400 Sobic002G236700 Sobic002G236700 Sobic010G144900--Sobic002G236700 Sobic010G144900--Sobic001G371100 Sobic009G088200 Sobic009G088200 Sobic002G280700--Sobic009G088200 Sobic001G528600 Sobic001G528600 Sobic002G280700--Sobic001G528600 Sobic007G152900 Sobic007G152900 Sobic002G280700--Sobic007G152900 Sobic002G280700--Sobic010G032700 Sobic003G396600 Sobic003G396600 Sobic002G280700--Sobic003G396600 Sobic002G280700--Sobic001G371100 Sobic003G294100 Sobic003G294100 Sobic002G280700--Sobic003G294100 Sobic005G164700 Sobic005G164700 Sobic002G280700--Sobic005G164700 Sobic002G280700--Sobic001G397000 Sobic001G397000--Sobic001G371100 Sobic003G300900 Sobic003G300900 Sobic001G397000--Sobic003G300900 Sobic001G397000--Sobic003G396600 Sobic007G134800 Sobic007G134800 Sobic001G397000--Sobic007G134800 Sobic001G397000--Sobic010G144900 Sobic008G100700 Sobic008G100700 Sobic001G397000--Sobic008G100700 Sobic001G397000--Sobic001G081900 Sobic002G101000 Sobic002G101000 Sobic001G397000--Sobic002G101000 Sobic001G397000--Sobic001G228200 Sobic002G186900--Sobic009G059500 Sobic002G271300 Sobic002G271300 Sobic002G186900--Sobic002G271300 Sobic003G096000 Sobic003G096000 Sobic002G186900--Sobic003G096000 Sobic010G089500 Sobic010G089500 Sobic002G186900--Sobic010G089500 Sobic010G101600 Sobic010G101600 Sobic002G186900--Sobic010G101600 Sobic004G056400 Sobic004G056400 Sobic002G186900--Sobic004G056400 Sobic002G186900--Sobic001G228200 Sobic006G200000 Sobic006G200000 Sobic002G186900--Sobic006G200000 Sobic002G186900--Sobic007G044400 Sobic004G233700 Sobic004G233700 Sobic007G113300--Sobic004G233700 Sobic002G218600 Sobic002G218600 Sobic007G113300--Sobic002G218600 Sobic007G113300--Sobic008G100700 Sobic001G304800 Sobic001G304800 Sobic007G113300--Sobic001G304800 Sobic004G286700 Sobic004G286700 Sobic007G113300--Sobic004G286700 Sobic010G067800 Sobic010G067800 Sobic007G113300--Sobic010G067800 Sobic010G103700 Sobic010G103700 Sobic007G113300--Sobic010G103700 Sobic003G179500 Sobic003G179500 Sobic007G113300--Sobic003G179500 Sobic007G113300--Sobic008G090000 Sobic002G159900--Sobic010G089500 Sobic002G159900--Sobic004G056400 Sobic002G159900--Sobic002G186900 Sobic001G418000 Sobic001G418000 Sobic002G159900--Sobic001G418000 Sobic002G159900--Sobic003G096000 Sobic001G410200 Sobic001G410200 Sobic002G159900--Sobic001G410200 Sobic001G173300 Sobic001G173300 Sobic002G159900--Sobic001G173300 Sobic004G297300 Sobic004G297300 Sobic002G159900--Sobic004G297300 Sobic010G065900 Sobic010G065900 Sobic002G159900--Sobic010G065900
Octagon: transcription factors


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