Gene annotation
Transcriptome id Sobic.001G397000.1
Synonym Sb01g037570
Functional annotation argininosuccinate lyase, putative, expressed
UniProt C5WMI0
Pfam PF14698 PF00206
Panther DB PTHR11444 PTHR11444:SF3
NCBI CDD -
KEGG Orthology K01755; argH, argininosuccinate lyase
Gene Ontology GO:0004056; argininosuccinate lyase activity


Orthologs (automatic annotation)
TAIR AT5G10920 : L-Aspartase-like family protein
RAP-DB (Rice) LOC_Os03g19280.1 : argininosuccinate lyase, putative, expressed
MaizeGDB (Corn) Zm00025a052592
Brachypodium KQK22020
Barley HORVU4Hr1G054060.3 , HORVU4Hr1G054060.2 , HORVU4Hr1G054060.5 , HORVU4Hr1G054060.4
Wheat TraesCS4A02G119700 , TraesCS4B02G185000 , TraesCS4D02G186300
Populus -


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cDNA sequences
Sobic.001G397000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
2 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
3 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
4 Sobic.007G134800 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
5 Sobic.010G144900 fiber protein Fb34, putative, expressed -
6 Sobic.008G100700 SSXT protein, putative, expressed -
7 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
8 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
9 Sobic.001G228200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
10 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
11 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
12 Sobic.002G230900 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
13 Sobic.009G088200 -(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
14 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
15 Sobic.008G170500 AGC_PVPK_like_kin82y.20 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
16 Sobic.007G113300 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
17 Sobic.001G261400 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
18 Sobic.006G200000 RNA recognition motif, putative, expressed -
19 Sobic.004G082700 PPR repeat containing protein, expressed -
20 Sobic.009G052200 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase


Gene co-expression network
sample Sobic001G397000 Sobic001G397000 Sobic001G371100 Sobic001G371100 Sobic001G397000--Sobic001G371100 Sobic003G300900 Sobic003G300900 Sobic001G397000--Sobic003G300900 Sobic003G396600 Sobic003G396600 Sobic001G397000--Sobic003G396600 Sobic007G134800 Sobic007G134800 Sobic001G397000--Sobic007G134800 Sobic010G144900 Sobic010G144900 Sobic001G397000--Sobic010G144900 Sobic008G100700 Sobic008G100700 Sobic001G397000--Sobic008G100700 Sobic001G081900 Sobic001G081900 Sobic001G397000--Sobic001G081900 Sobic002G101000 Sobic002G101000 Sobic001G397000--Sobic002G101000 Sobic001G228200 Sobic001G228200 Sobic001G397000--Sobic001G228200 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G371100--Sobic001G081900 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200 Sobic008G170500 Sobic008G170500 Sobic003G300900--Sobic008G170500 Sobic010G190300 Sobic010G190300 Sobic003G300900--Sobic010G190300 Sobic008G135500 Sobic008G135500 Sobic003G300900--Sobic008G135500 Sobic003G128700 Sobic003G128700 Sobic003G300900--Sobic003G128700 Sobic001G410200 Sobic001G410200 Sobic003G300900--Sobic001G410200 Sobic006G200000 Sobic006G200000 Sobic003G300900--Sobic006G200000 Sobic003G300900--Sobic001G397000 Sobic006G245500 Sobic006G245500 Sobic003G300900--Sobic006G245500 Sobic010G090100 Sobic010G090100 Sobic003G300900--Sobic010G090100 Sobic003G396600--Sobic006G200000 Sobic004G349700 Sobic004G349700 Sobic003G396600--Sobic004G349700 Sobic003G011100 Sobic003G011100 Sobic003G396600--Sobic003G011100 Sobic005G080900 Sobic005G080900 Sobic003G396600--Sobic005G080900 Sobic010G115200 Sobic010G115200 Sobic003G396600--Sobic010G115200 Sobic009G088200 Sobic009G088200 Sobic003G396600--Sobic009G088200 Sobic003G396600--Sobic002G101000 Sobic010G069400 Sobic010G069400 Sobic003G396600--Sobic010G069400 Sobic003G396600--Sobic001G397000 Sobic007G134800--Sobic001G397000 Sobic007G134800--Sobic003G300900 Sobic007G134800--Sobic001G410200 Sobic007G134800--Sobic002G101000 Sobic007G112100 Sobic007G112100 Sobic007G134800--Sobic007G112100 Sobic003G179000 Sobic003G179000 Sobic007G134800--Sobic003G179000 Sobic007G029400 Sobic007G029400 Sobic007G134800--Sobic007G029400 Sobic001G336050 Sobic001G336050 Sobic007G134800--Sobic001G336050 Sobic007G079600 Sobic007G079600 Sobic007G134800--Sobic007G079600 Sobic009G189200 Sobic009G189200 Sobic010G144900--Sobic009G189200 Sobic006G104100 Sobic006G104100 Sobic010G144900--Sobic006G104100 Sobic010G144900--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic010G144900--Sobic006G120700 Sobic009G059500 Sobic009G059500 Sobic010G144900--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic010G144900--Sobic002G186900 Sobic007G044400 Sobic007G044400 Sobic010G144900--Sobic007G044400 Sobic002G236700 Sobic002G236700 Sobic010G144900--Sobic002G236700 Sobic010G144900--Sobic001G371100 Sobic007G113300 Sobic007G113300 Sobic008G100700--Sobic007G113300 Sobic008G100700--Sobic004G082700 Sobic002G218600 Sobic002G218600 Sobic008G100700--Sobic002G218600 Sobic001G532800 Sobic001G532800 Sobic008G100700--Sobic001G532800 Sobic002G303800 Sobic002G303800 Sobic008G100700--Sobic002G303800 Sobic008G100700--Sobic001G397000 Sobic010G191000 Sobic010G191000 Sobic008G100700--Sobic010G191000 Sobic007G218100 Sobic007G218100 Sobic008G100700--Sobic007G218100 Sobic003G179500 Sobic003G179500 Sobic008G100700--Sobic003G179500 Sobic001G081900--Sobic001G371100 Sobic001G081900--Sobic001G397000 Sobic010G125100 Sobic010G125100 Sobic001G081900--Sobic010G125100 Sobic001G081900--Sobic007G079600 Sobic001G081900--Sobic010G144900 Sobic001G081900--Sobic002G101000 Sobic002G304400 Sobic002G304400 Sobic001G081900--Sobic002G304400 Sobic007G171200 Sobic007G171200 Sobic001G081900--Sobic007G171200 Sobic001G081900--Sobic010G032700 Sobic009G104100 Sobic009G104100 Sobic002G101000--Sobic009G104100 Sobic007G220900 Sobic007G220900 Sobic002G101000--Sobic007G220900 Sobic002G101000--Sobic007G029400 Sobic009G179100 Sobic009G179100 Sobic002G101000--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic002G101000--Sobic005G050500 Sobic009G101700 Sobic009G101700 Sobic002G101000--Sobic009G101700 Sobic002G054000 Sobic002G054000 Sobic002G101000--Sobic002G054000 Sobic004G342400 Sobic004G342400 Sobic002G101000--Sobic004G342400 Sobic002G101000--Sobic004G349700 Sobic008G168100 Sobic008G168100 Sobic001G228200--Sobic008G168100 Sobic001G228200--Sobic009G059500 Sobic001G228200--Sobic002G186900 Sobic001G228200--Sobic001G371100 Sobic003G146800 Sobic003G146800 Sobic001G228200--Sobic003G146800 Sobic001G228200--Sobic001G397000 Sobic001G228200--Sobic007G113300 Sobic002G280700 Sobic002G280700 Sobic001G228200--Sobic002G280700 Sobic004G326600 Sobic004G326600 Sobic001G228200--Sobic004G326600
Octagon: transcription factors


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