Gene annotation
Transcriptome id Sobic.004G082700.1
Synonym Sb04g006810
Functional annotation PPR repeat containing protein, expressed
UniProt C5XXK1
Pfam PF13812 PF01535
Panther DB PTHR24015 PTHR24015:SF350
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02490 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g73950.2 : PPR repeat containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ93899
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G100700 SSXT protein, putative, expressed -
2 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
3 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
4 Sobic.003G144000 pentatricopeptide, putative, expressed -
5 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
6 Sobic.002G268100 - K16911: ATP-dependent RNA helicase DDX21
7 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
8 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
9 Sobic.001G493400 nucleic acid binding protein, putative, expressed -
10 Sobic.005G088900 AGAP007117-PA, putative, expressed -
11 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
12 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
13 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
14 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
15 Sobic.001G532800 RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
16 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
17 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
18 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
19 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
20 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase


Gene co-expression network
sample Sobic004G082700 Sobic004G082700 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic001G371100 Sobic001G371100 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic001G008500 Sobic001G008500 Sobic004G082700--Sobic001G008500 Sobic001G493400 Sobic001G493400 Sobic004G082700--Sobic001G493400 Sobic007G113300 Sobic007G113300 Sobic008G100700--Sobic007G113300 Sobic008G100700--Sobic004G082700 Sobic002G218600 Sobic002G218600 Sobic008G100700--Sobic002G218600 Sobic001G532800 Sobic001G532800 Sobic008G100700--Sobic001G532800 Sobic002G303800 Sobic002G303800 Sobic008G100700--Sobic002G303800 Sobic001G397000 Sobic001G397000 Sobic008G100700--Sobic001G397000 Sobic010G191000 Sobic010G191000 Sobic008G100700--Sobic010G191000 Sobic007G218100 Sobic007G218100 Sobic008G100700--Sobic007G218100 Sobic003G179500 Sobic003G179500 Sobic008G100700--Sobic003G179500 Sobic001G167500--Sobic010G134100 Sobic001G413100 Sobic001G413100 Sobic001G167500--Sobic001G413100 Sobic009G041800 Sobic009G041800 Sobic001G167500--Sobic009G041800 Sobic002G367800 Sobic002G367800 Sobic001G167500--Sobic002G367800 Sobic001G176900 Sobic001G176900 Sobic001G167500--Sobic001G176900 Sobic003G130000 Sobic003G130000 Sobic001G167500--Sobic003G130000 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G214900 Sobic001G214900 Sobic001G167500--Sobic001G214900 Sobic010G134100--Sobic001G167500 Sobic010G134100--Sobic001G413100 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic010G134100--Sobic001G493400 Sobic004G356300 Sobic004G356300 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic010G134100--Sobic009G041800 Sobic010G134100--Sobic004G082700 Sobic005G088900 Sobic005G088900 Sobic003G144000--Sobic005G088900 Sobic001G199500 Sobic001G199500 Sobic003G144000--Sobic001G199500 Sobic010G038800 Sobic010G038800 Sobic003G144000--Sobic010G038800 Sobic008G111600 Sobic008G111600 Sobic003G144000--Sobic008G111600 Sobic003G432300 Sobic003G432300 Sobic003G144000--Sobic003G432300 Sobic003G144000--Sobic005G098000 Sobic003G144000--Sobic004G082700 Sobic006G181800 Sobic006G181800 Sobic003G144000--Sobic006G181800 Sobic001G200200 Sobic001G200200 Sobic003G144000--Sobic001G200200 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic009G010300 Sobic009G010300 Sobic002G268100--Sobic009G010300 Sobic001G372800 Sobic001G372800 Sobic002G268100--Sobic001G372800 Sobic001G483800 Sobic001G483800 Sobic002G268100--Sobic001G483800 Sobic002G268100--Sobic004G082700 Sobic002G268100--Sobic010G038800 Sobic003G322200 Sobic003G322200 Sobic002G268100--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic002G268100--Sobic003G123200 Sobic010G252700 Sobic010G252700 Sobic002G268100--Sobic010G252700 Sobic002G362200 Sobic002G362200 Sobic002G268100--Sobic002G362200 Sobic010G161525 Sobic010G161525 Sobic005G098000--Sobic010G161525 Sobic005G098000--Sobic008G111600 Sobic005G098000--Sobic003G144000 Sobic006G206200 Sobic006G206200 Sobic005G098000--Sobic006G206200 Sobic003G412000 Sobic003G412000 Sobic005G098000--Sobic003G412000 Sobic005G098000--Sobic003G432300 Sobic005G098000--Sobic003G130000 Sobic005G098000--Sobic005G088900 Sobic005G098000--Sobic010G038800 Sobic001G008500--Sobic004G047200 Sobic001G008500--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic001G008500--Sobic003G008600 Sobic001G115500 Sobic001G115500 Sobic001G008500--Sobic001G115500 Sobic009G071700 Sobic009G071700 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic002G423500 Sobic002G423500 Sobic001G008500--Sobic002G423500 Sobic001G008500--Sobic001G371100 Sobic001G493400--Sobic010G134100 Sobic004G002500 Sobic004G002500 Sobic001G493400--Sobic004G002500 Sobic001G493400--Sobic001G214900 Sobic001G493400--Sobic001G167500 Sobic001G493400--Sobic004G082700 Sobic007G108100 Sobic007G108100 Sobic001G493400--Sobic007G108100 Sobic006G254300 Sobic006G254300 Sobic001G493400--Sobic006G254300 Sobic001G493400--Sobic001G228200 Sobic001G493400--Sobic001G371100
Octagon: transcription factors


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