Gene annotation
Transcriptome id Sobic.001G167500.2,Sobic.001G167500.1
Synonym Sb01g014640
Functional annotation ribosomal protein L25, putative, expressed
UniProt A0A1Z5S5Z9 , C5WSB5
Pfam PF01386 PF01386 PF14693
Panther DB PTHR33284 PTHR33284:SF2
NCBI CDD -
KEGG Orthology K02897; RP-L25, large subunit ribosomal protein L25
Gene Ontology GO:0008097; 5S rRNA binding GO:0006412translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G66860 : Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
RAP-DB (Rice) LOC_Os03g41612.1 : ribosomal protein L25, putative, expressed
MaizeGDB (Corn) Zm00025a017307
Brachypodium KQK14194
Barley HORVU4Hr1G013640.1
Wheat TraesCS4B02G080000 , TraesCS4A02G235000 , TraesCS4D02G078900
Populus -


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cDNA sequences
Sobic.001G167500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
2 Sobic.001G413100 nucleotide binding protein, putative, expressed -
3 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
4 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
5 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
6 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
7 Sobic.004G082700 PPR repeat containing protein, expressed -
8 Sobic.010G197200 peroxiredoxin, putative, expressed -
9 Sobic.001G214900 expressed protein -
10 Sobic.004G007700 pentatricopeptide, putative, expressed -
11 Sobic.004G356300 expressed protein -
12 Sobic.003G194300 50S ribosomal protein, putative, expressed K02914: RP-L34, MRPL34, large subunit ribosomal protein L34
13 Sobic.010G125100 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
14 Sobic.001G493400 nucleic acid binding protein, putative, expressed -
15 Sobic.002G304400 expressed protein -
16 Sobic.004G069400 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
18 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
19 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
20 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G167500 Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic001G167500--Sobic010G134100 Sobic001G413100 Sobic001G413100 Sobic001G167500--Sobic001G413100 Sobic009G041800 Sobic009G041800 Sobic001G167500--Sobic009G041800 Sobic002G367800 Sobic002G367800 Sobic001G167500--Sobic002G367800 Sobic001G176900 Sobic001G176900 Sobic001G167500--Sobic001G176900 Sobic003G130000 Sobic003G130000 Sobic001G167500--Sobic003G130000 Sobic004G082700 Sobic004G082700 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G214900 Sobic001G214900 Sobic001G167500--Sobic001G214900 Sobic010G134100--Sobic001G167500 Sobic010G134100--Sobic001G413100 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic004G356300 Sobic004G356300 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic010G134100--Sobic009G041800 Sobic010G134100--Sobic004G082700 Sobic001G413100--Sobic010G134100 Sobic001G413100--Sobic001G167500 Sobic001G413100--Sobic009G041800 Sobic008G084100 Sobic008G084100 Sobic001G413100--Sobic008G084100 Sobic004G069400 Sobic004G069400 Sobic001G413100--Sobic004G069400 Sobic001G413100--Sobic001G176900 Sobic002G304400 Sobic002G304400 Sobic001G413100--Sobic002G304400 Sobic003G388900 Sobic003G388900 Sobic001G413100--Sobic003G388900 Sobic003G388700 Sobic003G388700 Sobic001G413100--Sobic003G388700 Sobic009G041800--Sobic003G130000 Sobic004G212100 Sobic004G212100 Sobic009G041800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic009G041800--Sobic001G011000 Sobic009G041800--Sobic002G367800 Sobic009G041800--Sobic001G167500 Sobic009G041800--Sobic001G413100 Sobic001G268300 Sobic001G268300 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic009G041800--Sobic010G134100 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic001G522000 Sobic001G522000 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic002G367800--Sobic001G214900 Sobic002G071100 Sobic002G071100 Sobic002G367800--Sobic002G071100 Sobic002G070300 Sobic002G070300 Sobic002G367800--Sobic002G070300 Sobic001G176900--Sobic010G134100 Sobic001G176900--Sobic004G356300 Sobic001G176900--Sobic001G413100 Sobic001G176900--Sobic001G167500 Sobic001G176900--Sobic002G367800 Sobic001G176900--Sobic003G388700 Sobic004G184000 Sobic004G184000 Sobic001G176900--Sobic004G184000 Sobic004G007700 Sobic004G007700 Sobic001G176900--Sobic004G007700 Sobic003G075200 Sobic003G075200 Sobic001G176900--Sobic003G075200 Sobic003G130000--Sobic009G041800 Sobic003G130000--Sobic001G167500 Sobic003G235700 Sobic003G235700 Sobic003G130000--Sobic003G235700 Sobic003G130000--Sobic010G134100 Sobic006G251600 Sobic006G251600 Sobic003G130000--Sobic006G251600 Sobic003G205400 Sobic003G205400 Sobic003G130000--Sobic003G205400 Sobic003G008600 Sobic003G008600 Sobic003G130000--Sobic003G008600 Sobic005G098000 Sobic005G098000 Sobic003G130000--Sobic005G098000 Sobic003G130000--Sobic001G268300 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic004G082700--Sobic001G167500 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic001G371100 Sobic001G371100 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic004G082700--Sobic005G098000 Sobic001G008500 Sobic001G008500 Sobic004G082700--Sobic001G008500 Sobic004G082700--Sobic001G493400 Sobic008G059900 Sobic008G059900 Sobic010G197200--Sobic008G059900 Sobic001G530100 Sobic001G530100 Sobic010G197200--Sobic001G530100 Sobic010G197200--Sobic001G167500 Sobic009G081800 Sobic009G081800 Sobic010G197200--Sobic009G081800 Sobic006G127200 Sobic006G127200 Sobic010G197200--Sobic006G127200 Sobic005G031000 Sobic005G031000 Sobic010G197200--Sobic005G031000 Sobic002G426100 Sobic002G426100 Sobic010G197200--Sobic002G426100 Sobic002G125800 Sobic002G125800 Sobic010G197200--Sobic002G125800 Sobic006G126800 Sobic006G126800 Sobic010G197200--Sobic006G126800 Sobic001G060300 Sobic001G060300 Sobic001G214900--Sobic001G060300 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic001G214900--Sobic003G205400 Sobic001G214900--Sobic010G134100 Sobic010G277000 Sobic010G277000 Sobic001G214900--Sobic010G277000 Sobic007G143000 Sobic007G143000 Sobic001G214900--Sobic007G143000 Sobic002G402500 Sobic002G402500 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800
Octagon: transcription factors


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