Gene annotation
Transcriptome id Sobic.001G176900.1
Synonym Sb01g015390
Functional annotation mTERF family protein, expressed
UniProt C5WTC0
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF33
NCBI CDD KOG1267; Mitochondrial transcription termination factor, mTERF
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT1G21150 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os06g12040.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a007162
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G176900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
2 Sobic.004G356300 expressed protein -
3 Sobic.001G413100 nucleotide binding protein, putative, expressed -
4 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
5 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
6 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
7 Sobic.004G184000 SFT2, putative, expressed -
8 Sobic.004G007700 pentatricopeptide, putative, expressed -
9 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
10 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
11 Sobic.003G326900 expressed protein -
12 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
13 Sobic.010G258000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
14 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G214900 expressed protein -
16 Sobic.006G153200 OsClp7 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
17 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
18 Sobic.005G129201 - -
19 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
20 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25


Gene co-expression network
sample Sobic001G176900 Sobic001G176900 Sobic010G134100 Sobic010G134100 Sobic001G176900--Sobic010G134100 Sobic004G356300 Sobic004G356300 Sobic001G176900--Sobic004G356300 Sobic001G413100 Sobic001G413100 Sobic001G176900--Sobic001G413100 Sobic001G167500 Sobic001G167500 Sobic001G176900--Sobic001G167500 Sobic002G367800 Sobic002G367800 Sobic001G176900--Sobic002G367800 Sobic003G388700 Sobic003G388700 Sobic001G176900--Sobic003G388700 Sobic004G184000 Sobic004G184000 Sobic001G176900--Sobic004G184000 Sobic004G007700 Sobic004G007700 Sobic001G176900--Sobic004G007700 Sobic003G075200 Sobic003G075200 Sobic001G176900--Sobic003G075200 Sobic010G134100--Sobic001G167500 Sobic010G134100--Sobic001G413100 Sobic010G134100--Sobic001G176900 Sobic001G214900 Sobic001G214900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic009G041800 Sobic009G041800 Sobic010G134100--Sobic009G041800 Sobic004G082700 Sobic004G082700 Sobic010G134100--Sobic004G082700 Sobic004G356300--Sobic004G007700 Sobic001G011000 Sobic001G011000 Sobic004G356300--Sobic001G011000 Sobic004G356300--Sobic003G075200 Sobic004G356300--Sobic002G367800 Sobic002G090500 Sobic002G090500 Sobic004G356300--Sobic002G090500 Sobic008G057900 Sobic008G057900 Sobic004G356300--Sobic008G057900 Sobic004G356300--Sobic001G176900 Sobic004G356300--Sobic010G134100 Sobic002G071100 Sobic002G071100 Sobic004G356300--Sobic002G071100 Sobic001G413100--Sobic010G134100 Sobic001G413100--Sobic001G167500 Sobic001G413100--Sobic009G041800 Sobic008G084100 Sobic008G084100 Sobic001G413100--Sobic008G084100 Sobic004G069400 Sobic004G069400 Sobic001G413100--Sobic004G069400 Sobic001G413100--Sobic001G176900 Sobic002G304400 Sobic002G304400 Sobic001G413100--Sobic002G304400 Sobic003G388900 Sobic003G388900 Sobic001G413100--Sobic003G388900 Sobic001G413100--Sobic003G388700 Sobic001G167500--Sobic010G134100 Sobic001G167500--Sobic001G413100 Sobic001G167500--Sobic009G041800 Sobic001G167500--Sobic002G367800 Sobic001G167500--Sobic001G176900 Sobic003G130000 Sobic003G130000 Sobic001G167500--Sobic003G130000 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G167500--Sobic001G214900 Sobic004G212100 Sobic004G212100 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic001G522000 Sobic001G522000 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic002G367800--Sobic001G214900 Sobic002G367800--Sobic002G071100 Sobic002G070300 Sobic002G070300 Sobic002G367800--Sobic002G070300 Sobic007G119600 Sobic007G119600 Sobic003G388700--Sobic007G119600 Sobic001G073600 Sobic001G073600 Sobic003G388700--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic003G388700--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic003G388700--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic003G388700--Sobic002G079700 Sobic001G473400 Sobic001G473400 Sobic003G388700--Sobic001G473400 Sobic010G002800 Sobic010G002800 Sobic003G388700--Sobic010G002800 Sobic010G258000 Sobic010G258000 Sobic003G388700--Sobic010G258000 Sobic006G041800 Sobic006G041800 Sobic003G388700--Sobic006G041800 Sobic007G165300 Sobic007G165300 Sobic004G184000--Sobic007G165300 Sobic005G129201 Sobic005G129201 Sobic004G184000--Sobic005G129201 Sobic003G326900 Sobic003G326900 Sobic004G184000--Sobic003G326900 Sobic004G184000--Sobic010G258000 Sobic001G451901 Sobic001G451901 Sobic004G184000--Sobic001G451901 Sobic003G348200 Sobic003G348200 Sobic004G184000--Sobic003G348200 Sobic007G217400 Sobic007G217400 Sobic004G184000--Sobic007G217400 Sobic001G110300 Sobic001G110300 Sobic004G184000--Sobic001G110300 Sobic001G116000 Sobic001G116000 Sobic004G184000--Sobic001G116000 Sobic004G007700--Sobic004G356300 Sobic010G018900 Sobic010G018900 Sobic004G007700--Sobic010G018900 Sobic004G007700--Sobic001G011000 Sobic004G007700--Sobic003G075200 Sobic004G007700--Sobic002G367800 Sobic010G080900 Sobic010G080900 Sobic004G007700--Sobic010G080900 Sobic004G007700--Sobic010G002800 Sobic007G140100 Sobic007G140100 Sobic004G007700--Sobic007G140100 Sobic004G007700--Sobic001G167500 Sobic003G075200--Sobic004G356300 Sobic001G352800 Sobic001G352800 Sobic003G075200--Sobic001G352800 Sobic003G075200--Sobic008G057900 Sobic010G188900 Sobic010G188900 Sobic003G075200--Sobic010G188900 Sobic009G220000 Sobic009G220000 Sobic003G075200--Sobic009G220000 Sobic002G153000 Sobic002G153000 Sobic003G075200--Sobic002G153000 Sobic003G075200--Sobic002G090500 Sobic003G075200--Sobic004G007700 Sobic006G153200 Sobic006G153200 Sobic003G075200--Sobic006G153200
Octagon: transcription factors


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