Gene annotation
Transcriptome id Sobic.003G205400.1
Synonym Sb03g026710
Functional annotation ribosomal protein L25, putative, expressed
UniProt C5XPK7
Pfam PF01386 PF14693
Panther DB PTHR33284 PTHR33284:SF1
NCBI CDD -
KEGG Orthology K02897; RP-L25, large subunit ribosomal protein L25
Gene Ontology GO:0008097; 5S rRNA binding GO:0006412translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G23620 : Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
RAP-DB (Rice) LOC_Os05g18750.1 : ribosomal protein L25, putative, expressed
MaizeGDB (Corn) Zm00025a038437
Brachypodium KQK08552
Barley HORVU3Hr1G051530.2 , HORVU3Hr1G051530.1
Wheat TraesCS3D02G215300 , TraesCS3B02G243200 , TraesCS3A02G212900
Populus -


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cDNA sequences
Sobic.003G205400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
2 Sobic.001G214900 expressed protein -
3 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
4 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
5 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
6 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
7 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
8 Sobic.001G413100 nucleotide binding protein, putative, expressed -
9 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
10 Sobic.003G196200 elongation factor TS family protein, expressed -
11 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
12 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
13 Sobic.007G191600 exosome complex exonuclease, putative, expressed K12586: RRP43, EXOSC8, exosome complex component RRP43
14 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
15 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
16 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
17 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
18 Sobic.001G060300 expressed protein -
19 Sobic.006G259900 reticulon domain containing protein, putative, expressed -
20 Sobic.001G473800 trpH, putative, expressed K07053: 3',5'-nucleoside bisphosphate phosphatase


Gene co-expression network
sample Sobic003G205400 Sobic003G205400 Sobic002G402500 Sobic002G402500 Sobic003G205400--Sobic002G402500 Sobic001G214900 Sobic001G214900 Sobic003G205400--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic003G205400--Sobic001G522000 Sobic003G388900 Sobic003G388900 Sobic003G205400--Sobic003G388900 Sobic002G367800 Sobic002G367800 Sobic003G205400--Sobic002G367800 Sobic010G277000 Sobic010G277000 Sobic003G205400--Sobic010G277000 Sobic010G134100 Sobic010G134100 Sobic003G205400--Sobic010G134100 Sobic001G413100 Sobic001G413100 Sobic003G205400--Sobic001G413100 Sobic002G423500 Sobic002G423500 Sobic003G205400--Sobic002G423500 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic002G402500--Sobic003G205400 Sobic002G402500--Sobic003G388900 Sobic001G060300 Sobic001G060300 Sobic002G402500--Sobic001G060300 Sobic002G402500--Sobic001G214900 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic001G214900--Sobic001G060300 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic001G214900--Sobic003G205400 Sobic001G214900--Sobic010G134100 Sobic001G214900--Sobic010G277000 Sobic007G143000 Sobic007G143000 Sobic001G214900--Sobic007G143000 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800 Sobic001G522000--Sobic002G367800 Sobic001G522000--Sobic002G423500 Sobic001G490500 Sobic001G490500 Sobic001G522000--Sobic001G490500 Sobic001G522000--Sobic006G041100 Sobic001G522000--Sobic003G388900 Sobic001G522000--Sobic003G205400 Sobic001G522000--Sobic002G402500 Sobic006G265600 Sobic006G265600 Sobic001G522000--Sobic006G265600 Sobic001G117800 Sobic001G117800 Sobic001G522000--Sobic001G117800 Sobic003G388900--Sobic002G367800 Sobic003G388900--Sobic002G402500 Sobic003G388900--Sobic001G522000 Sobic003G202100 Sobic003G202100 Sobic003G388900--Sobic003G202100 Sobic004G212100 Sobic004G212100 Sobic003G388900--Sobic004G212100 Sobic001G304000 Sobic001G304000 Sobic003G388900--Sobic001G304000 Sobic002G295900 Sobic002G295900 Sobic003G388900--Sobic002G295900 Sobic003G388900--Sobic001G413100 Sobic003G388900--Sobic003G205400 Sobic002G367800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic009G041800 Sobic009G041800 Sobic002G367800--Sobic009G041800 Sobic002G367800--Sobic001G522000 Sobic004G356300 Sobic004G356300 Sobic002G367800--Sobic004G356300 Sobic002G367800--Sobic001G214900 Sobic002G071100 Sobic002G071100 Sobic002G367800--Sobic002G071100 Sobic002G070300 Sobic002G070300 Sobic002G367800--Sobic002G070300 Sobic008G084100 Sobic008G084100 Sobic010G277000--Sobic008G084100 Sobic007G191600 Sobic007G191600 Sobic010G277000--Sobic007G191600 Sobic001G035400 Sobic001G035400 Sobic010G277000--Sobic001G035400 Sobic010G277000--Sobic001G214900 Sobic003G238500 Sobic003G238500 Sobic010G277000--Sobic003G238500 Sobic001G026600 Sobic001G026600 Sobic010G277000--Sobic001G026600 Sobic002G054000 Sobic002G054000 Sobic010G277000--Sobic002G054000 Sobic010G277000--Sobic003G205400 Sobic005G027300 Sobic005G027300 Sobic010G277000--Sobic005G027300 Sobic001G167500 Sobic001G167500 Sobic010G134100--Sobic001G167500 Sobic010G134100--Sobic001G413100 Sobic001G176900 Sobic001G176900 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic010G134100--Sobic009G041800 Sobic004G082700 Sobic004G082700 Sobic010G134100--Sobic004G082700 Sobic001G413100--Sobic010G134100 Sobic001G413100--Sobic001G167500 Sobic001G413100--Sobic009G041800 Sobic001G413100--Sobic008G084100 Sobic004G069400 Sobic004G069400 Sobic001G413100--Sobic004G069400 Sobic001G413100--Sobic001G176900 Sobic002G304400 Sobic002G304400 Sobic001G413100--Sobic002G304400 Sobic001G413100--Sobic003G388900 Sobic003G388700 Sobic003G388700 Sobic001G413100--Sobic003G388700 Sobic005G163700 Sobic005G163700 Sobic002G423500--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic001G460500 Sobic001G460500 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic002G423500--Sobic001G522000 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100
Octagon: transcription factors


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