Gene annotation
Transcriptome id Sobic.006G259900.1
Synonym Sb06g032290
Functional annotation reticulon domain containing protein, putative, expressed
UniProt C5YA32
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF77
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19460 : Reticulon family protein
RAP-DB (Rice) LOC_Os04g57420.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009374 , Zm00025a057339 , Zm00025a048706
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G261800 expressed protein -
2 Sobic.002G199400 growth regulator related protein, putative, expressed -
3 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
4 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
5 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
6 Sobic.002G141700 unc-50, putative, expressed -
7 Sobic.002G087000 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
8 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
9 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
10 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
11 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
12 Sobic.001G151600 OsRhmbd9 - Putative Rhomboid homologue, expressed -
13 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
14 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
15 Sobic.005G178300 peptidyl-prolyl cis-trans isomerase, putative, expressed -
16 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
17 Sobic.003G134800 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
18 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
19 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
20 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13


Gene co-expression network
sample Sobic006G259900 Sobic006G259900 Sobic003G261800 Sobic003G261800 Sobic006G259900--Sobic003G261800 Sobic002G199400 Sobic002G199400 Sobic006G259900--Sobic002G199400 Sobic007G217400 Sobic007G217400 Sobic006G259900--Sobic007G217400 Sobic007G022700 Sobic007G022700 Sobic006G259900--Sobic007G022700 Sobic001G073600 Sobic001G073600 Sobic006G259900--Sobic001G073600 Sobic002G141700 Sobic002G141700 Sobic006G259900--Sobic002G141700 Sobic002G087000 Sobic002G087000 Sobic006G259900--Sobic002G087000 Sobic001G035400 Sobic001G035400 Sobic006G259900--Sobic001G035400 Sobic009G207200 Sobic009G207200 Sobic006G259900--Sobic009G207200 Sobic003G261800--Sobic002G141700 Sobic001G443200 Sobic001G443200 Sobic003G261800--Sobic001G443200 Sobic004G347600 Sobic004G347600 Sobic003G261800--Sobic004G347600 Sobic010G040900 Sobic010G040900 Sobic003G261800--Sobic010G040900 Sobic009G191400 Sobic009G191400 Sobic003G261800--Sobic009G191400 Sobic001G112400 Sobic001G112400 Sobic003G261800--Sobic001G112400 Sobic001G387800 Sobic001G387800 Sobic003G261800--Sobic001G387800 Sobic004G000100 Sobic004G000100 Sobic003G261800--Sobic004G000100 Sobic004G344800 Sobic004G344800 Sobic003G261800--Sobic004G344800 Sobic002G160700 Sobic002G160700 Sobic002G199400--Sobic002G160700 Sobic001G151600 Sobic001G151600 Sobic002G199400--Sobic001G151600 Sobic001G469200 Sobic001G469200 Sobic002G199400--Sobic001G469200 Sobic001G358500 Sobic001G358500 Sobic002G199400--Sobic001G358500 Sobic002G199400--Sobic006G259900 Sobic006G282200 Sobic006G282200 Sobic002G199400--Sobic006G282200 Sobic005G175000 Sobic005G175000 Sobic002G199400--Sobic005G175000 Sobic004G030400 Sobic004G030400 Sobic002G199400--Sobic004G030400 Sobic005G144201 Sobic005G144201 Sobic002G199400--Sobic005G144201 Sobic001G542900 Sobic001G542900 Sobic007G217400--Sobic001G542900 Sobic009G212300 Sobic009G212300 Sobic007G217400--Sobic009G212300 Sobic006G079900 Sobic006G079900 Sobic007G217400--Sobic006G079900 Sobic007G165300 Sobic007G165300 Sobic007G217400--Sobic007G165300 Sobic008G137600 Sobic008G137600 Sobic007G217400--Sobic008G137600 Sobic009G234400 Sobic009G234400 Sobic007G217400--Sobic009G234400 Sobic007G217400--Sobic009G207200 Sobic002G423800 Sobic002G423800 Sobic007G217400--Sobic002G423800 Sobic006G211800 Sobic006G211800 Sobic007G217400--Sobic006G211800 Sobic004G256300 Sobic004G256300 Sobic007G022700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic007G022700--Sobic003G222700 Sobic003G085500 Sobic003G085500 Sobic007G022700--Sobic003G085500 Sobic002G232400 Sobic002G232400 Sobic007G022700--Sobic002G232400 Sobic007G022700--Sobic009G207200 Sobic004G186100 Sobic004G186100 Sobic007G022700--Sobic004G186100 Sobic001G191900 Sobic001G191900 Sobic007G022700--Sobic001G191900 Sobic007G022700--Sobic006G259900 Sobic003G005900 Sobic003G005900 Sobic007G022700--Sobic003G005900 Sobic001G073600--Sobic009G191400 Sobic009G224400 Sobic009G224400 Sobic001G073600--Sobic009G224400 Sobic003G135600 Sobic003G135600 Sobic001G073600--Sobic003G135600 Sobic002G395000 Sobic002G395000 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100 Sobic002G141700--Sobic003G261800 Sobic002G141700--Sobic001G443200 Sobic001G077900 Sobic001G077900 Sobic002G141700--Sobic001G077900 Sobic002G141700--Sobic002G087000 Sobic001G220900 Sobic001G220900 Sobic002G141700--Sobic001G220900 Sobic007G173700 Sobic007G173700 Sobic002G141700--Sobic007G173700 Sobic002G029300 Sobic002G029300 Sobic002G141700--Sobic002G029300 Sobic003G134800 Sobic003G134800 Sobic002G141700--Sobic003G134800 Sobic002G141700--Sobic001G542900 Sobic002G087000--Sobic001G035400 Sobic002G087000--Sobic002G141700 Sobic002G087000--Sobic001G443200 Sobic002G087000--Sobic009G234400 Sobic001G196100 Sobic001G196100 Sobic002G087000--Sobic001G196100 Sobic007G176200 Sobic007G176200 Sobic002G087000--Sobic007G176200 Sobic003G224300 Sobic003G224300 Sobic002G087000--Sobic003G224300 Sobic002G087000--Sobic006G211800 Sobic005G105500 Sobic005G105500 Sobic002G087000--Sobic005G105500 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic001G035400--Sobic002G087000 Sobic001G035400--Sobic001G073600 Sobic001G035400--Sobic001G443200 Sobic001G116000 Sobic001G116000 Sobic001G035400--Sobic001G116000 Sobic006G094600 Sobic006G094600 Sobic009G207200--Sobic006G094600 Sobic001G061200 Sobic001G061200 Sobic009G207200--Sobic001G061200 Sobic009G207200--Sobic001G358500 Sobic009G207200--Sobic002G029300 Sobic009G207200--Sobic003G005900 Sobic009G207200--Sobic007G217400 Sobic008G072200 Sobic008G072200 Sobic009G207200--Sobic008G072200 Sobic004G075200 Sobic004G075200 Sobic009G207200--Sobic004G075200 Sobic009G207200--Sobic007G022700
Octagon: transcription factors


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