Gene annotation
Transcriptome id Sobic.007G022700.1
Synonym COP13, CSN3, FUS11, Sb07g002000
Functional annotation proteasome subunit, putative, expressed
UniProt C5YMH2
Pfam PF01399
Panther DB PTHR10758
NCBI CDD KOG2582; COP9 signalosome, subunit CSN3
KEGG Orthology K12177; COPS3, COP9 signalosome complex subunit 3
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G14250 : Proteasome component (PCI) domain protein
RAP-DB (Rice) LOC_Os08g02550.1 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a040312 , Zm00025a030221
Brachypodium KQJ94898
Barley HORVU7Hr1G075150.7 , HORVU7Hr1G075150.6 , HORVU7Hr1G075150.5 , HORVU7Hr1G075150.4 , HORVU7Hr1G075150.3 , HORVU7Hr1G075150.2 , HORVU7Hr1G075150.1 , HORVU7Hr1G075150.9 , HORVU7Hr1G075150.8 , HORVU7Hr1G075150.12 , HORVU7Hr1G075150.11 , HORVU7Hr1G075150.10
Wheat TraesCS7A02G315600 , TraesCS7D02G312600 , TraesCS7D02G312600 , TraesCS7B02G216600 , TraesCS7B02G216600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
2 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
3 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
4 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
5 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
6 Sobic.004G186100 expressed protein -
7 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
8 Sobic.006G259900 reticulon domain containing protein, putative, expressed -
9 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
10 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
11 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
12 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
13 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
14 Sobic.001G347700 protein phosphotase protein, putative, expressed -
15 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
16 Sobic.004G354100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
17 Sobic.002G254500 oxidoreductase, putative, expressed K18160: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2
18 Sobic.004G151200 RNA-binding protein-like, putative, expressed -
19 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
20 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2


Gene co-expression network
sample Sobic007G022700 Sobic007G022700 Sobic004G256300 Sobic004G256300 Sobic007G022700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic007G022700--Sobic003G222700 Sobic003G085500 Sobic003G085500 Sobic007G022700--Sobic003G085500 Sobic002G232400 Sobic002G232400 Sobic007G022700--Sobic002G232400 Sobic009G207200 Sobic009G207200 Sobic007G022700--Sobic009G207200 Sobic004G186100 Sobic004G186100 Sobic007G022700--Sobic004G186100 Sobic001G191900 Sobic001G191900 Sobic007G022700--Sobic001G191900 Sobic006G259900 Sobic006G259900 Sobic007G022700--Sobic006G259900 Sobic003G005900 Sobic003G005900 Sobic007G022700--Sobic003G005900 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic004G256300--Sobic007G022700 Sobic001G229300 Sobic001G229300 Sobic004G256300--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic010G172400 Sobic010G172400 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic003G222700--Sobic001G229300 Sobic003G222700--Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic003G222700--Sobic002G399900 Sobic001G485300 Sobic001G485300 Sobic003G085500--Sobic001G485300 Sobic001G352800 Sobic001G352800 Sobic003G085500--Sobic001G352800 Sobic010G002800 Sobic010G002800 Sobic003G085500--Sobic010G002800 Sobic004G354100 Sobic004G354100 Sobic003G085500--Sobic004G354100 Sobic003G085500--Sobic007G022700 Sobic002G392400 Sobic002G392400 Sobic003G085500--Sobic002G392400 Sobic002G276800 Sobic002G276800 Sobic003G085500--Sobic002G276800 Sobic003G388700 Sobic003G388700 Sobic003G085500--Sobic003G388700 Sobic003G085500--Sobic004G186100 Sobic002G153000 Sobic002G153000 Sobic002G232400--Sobic002G153000 Sobic002G090500 Sobic002G090500 Sobic002G232400--Sobic002G090500 Sobic002G232400--Sobic001G352800 Sobic001G192700 Sobic001G192700 Sobic002G232400--Sobic001G192700 Sobic002G268700 Sobic002G268700 Sobic002G232400--Sobic002G268700 Sobic002G232400--Sobic010G002800 Sobic004G218600 Sobic004G218600 Sobic002G232400--Sobic004G218600 Sobic008G084100 Sobic008G084100 Sobic002G232400--Sobic008G084100 Sobic010G018500 Sobic010G018500 Sobic002G232400--Sobic010G018500 Sobic006G094600 Sobic006G094600 Sobic009G207200--Sobic006G094600 Sobic009G207200--Sobic001G061200 Sobic001G358500 Sobic001G358500 Sobic009G207200--Sobic001G358500 Sobic002G029300 Sobic002G029300 Sobic009G207200--Sobic002G029300 Sobic009G207200--Sobic003G005900 Sobic007G217400 Sobic007G217400 Sobic009G207200--Sobic007G217400 Sobic008G072200 Sobic008G072200 Sobic009G207200--Sobic008G072200 Sobic004G075200 Sobic004G075200 Sobic009G207200--Sobic004G075200 Sobic009G207200--Sobic007G022700 Sobic004G186100--Sobic010G002800 Sobic009G206600 Sobic009G206600 Sobic004G186100--Sobic009G206600 Sobic004G186100--Sobic007G022700 Sobic010G258000 Sobic010G258000 Sobic004G186100--Sobic010G258000 Sobic007G003100 Sobic007G003100 Sobic004G186100--Sobic007G003100 Sobic004G186100--Sobic003G222700 Sobic001G073600 Sobic001G073600 Sobic004G186100--Sobic001G073600 Sobic006G203900 Sobic006G203900 Sobic004G186100--Sobic006G203900 Sobic004G186100--Sobic003G085500 Sobic006G106600 Sobic006G106600 Sobic001G191900--Sobic006G106600 Sobic001G191900--Sobic001G229300 Sobic004G277400 Sobic004G277400 Sobic001G191900--Sobic004G277400 Sobic002G153400 Sobic002G153400 Sobic001G191900--Sobic002G153400 Sobic001G191900--Sobic007G022700 Sobic007G051400 Sobic007G051400 Sobic001G191900--Sobic007G051400 Sobic009G120400 Sobic009G120400 Sobic001G191900--Sobic009G120400 Sobic001G191900--Sobic004G354100 Sobic002G426100 Sobic002G426100 Sobic001G191900--Sobic002G426100 Sobic003G261800 Sobic003G261800 Sobic006G259900--Sobic003G261800 Sobic002G199400 Sobic002G199400 Sobic006G259900--Sobic002G199400 Sobic006G259900--Sobic007G217400 Sobic006G259900--Sobic007G022700 Sobic006G259900--Sobic001G073600 Sobic002G141700 Sobic002G141700 Sobic006G259900--Sobic002G141700 Sobic002G087000 Sobic002G087000 Sobic006G259900--Sobic002G087000 Sobic001G035400 Sobic001G035400 Sobic006G259900--Sobic001G035400 Sobic006G259900--Sobic009G207200 Sobic005G114500 Sobic005G114500 Sobic003G005900--Sobic005G114500 Sobic003G130900 Sobic003G130900 Sobic003G005900--Sobic003G130900 Sobic006G265600 Sobic006G265600 Sobic003G005900--Sobic006G265600 Sobic003G293000 Sobic003G293000 Sobic003G005900--Sobic003G293000 Sobic001G474400 Sobic001G474400 Sobic003G005900--Sobic001G474400 Sobic004G151200 Sobic004G151200 Sobic003G005900--Sobic004G151200 Sobic001G012900 Sobic001G012900 Sobic003G005900--Sobic001G012900 Sobic002G014800 Sobic002G014800 Sobic003G005900--Sobic002G014800 Sobic003G005900--Sobic009G207200
Octagon: transcription factors


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