Gene annotation
Transcriptome id Sobic.004G151200.1
Synonym Sb04g020120
Functional annotation RNA-binding protein-like, putative, expressed
UniProt C5XSH4
Pfam PF02136 PF00076
Panther DB PTHR10693:SF28 PTHR10693
NCBI CDD KOG0116; RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains
KEGG Orthology -
Gene Ontology GO:0005622; intracellular GO:0006810transport GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G25150 : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
RAP-DB (Rice) LOC_Os02g29480.1 : RNA-binding protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a020366 , Zm00025a031399 , Zm00025a011894
Brachypodium KQJ99538
Barley -
Wheat TraesCS2B02G295400 , TraesCS2B02G295400 , TraesCS2B02G295400 , TraesCS2B02G295400 , TraesCS2D02G277000 , TraesCS2D02G277000
Populus -


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cDNA sequences
Sobic.004G151200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G455000 glycosyl hydrolase, family 31, putative, expressed K05546: mannosyl-oligosaccharide alpha-1,3-glucosidase
2 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
3 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
4 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
5 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
6 Sobic.001G151600 OsRhmbd9 - Putative Rhomboid homologue, expressed -
7 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
8 Sobic.005G022100 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
9 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
10 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
11 Sobic.008G019532 - -
12 Sobic.005G114500 growth regulator related protein, putative, expressed -
13 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
14 Sobic.004G034300 transducin family protein, putative, expressed -
15 Sobic.006G282200 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed K12666: OST1, oligosaccharyltransferase complex subunit alpha (ribophorin I)
16 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
17 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
18 Sobic.004G060300 DNA binding protein, putative, expressed -
19 Sobic.007G111300 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
20 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma


Gene co-expression network
sample Sobic004G151200 Sobic004G151200 Sobic001G455000 Sobic001G455000 Sobic004G151200--Sobic001G455000 Sobic004G277400 Sobic004G277400 Sobic004G151200--Sobic004G277400 Sobic003G130900 Sobic003G130900 Sobic004G151200--Sobic003G130900 Sobic003G397900 Sobic003G397900 Sobic004G151200--Sobic003G397900 Sobic003G005900 Sobic003G005900 Sobic004G151200--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic004G151200--Sobic001G151600 Sobic001G445500 Sobic001G445500 Sobic004G151200--Sobic001G445500 Sobic005G022100 Sobic005G022100 Sobic004G151200--Sobic005G022100 Sobic006G265600 Sobic006G265600 Sobic004G151200--Sobic006G265600 Sobic001G455000--Sobic004G151200 Sobic001G455000--Sobic003G397900 Sobic007G118500 Sobic007G118500 Sobic001G455000--Sobic007G118500 Sobic008G019532 Sobic008G019532 Sobic001G455000--Sobic008G019532 Sobic001G356100 Sobic001G356100 Sobic001G455000--Sobic001G356100 Sobic001G455000--Sobic003G130900 Sobic001G114200 Sobic001G114200 Sobic001G455000--Sobic001G114200 Sobic001G455000--Sobic001G445500 Sobic003G394500 Sobic003G394500 Sobic001G455000--Sobic003G394500 Sobic004G277400--Sobic004G151200 Sobic004G277400--Sobic006G265600 Sobic005G114500 Sobic005G114500 Sobic004G277400--Sobic005G114500 Sobic001G191900 Sobic001G191900 Sobic004G277400--Sobic001G191900 Sobic003G360300 Sobic003G360300 Sobic004G277400--Sobic003G360300 Sobic007G051400 Sobic007G051400 Sobic004G277400--Sobic007G051400 Sobic003G222700 Sobic003G222700 Sobic004G277400--Sobic003G222700 Sobic004G277400--Sobic003G005900 Sobic004G277400--Sobic001G151600 Sobic003G130900--Sobic005G114500 Sobic003G130900--Sobic001G455000 Sobic003G130900--Sobic003G005900 Sobic003G130900--Sobic001G445500 Sobic003G130900--Sobic004G151200 Sobic003G130900--Sobic006G265600 Sobic001G012900 Sobic001G012900 Sobic003G130900--Sobic001G012900 Sobic002G182000 Sobic002G182000 Sobic003G130900--Sobic002G182000 Sobic005G059500 Sobic005G059500 Sobic003G130900--Sobic005G059500 Sobic003G397900--Sobic001G455000 Sobic003G397900--Sobic006G265600 Sobic001G474400 Sobic001G474400 Sobic003G397900--Sobic001G474400 Sobic003G304400 Sobic003G304400 Sobic003G397900--Sobic003G304400 Sobic002G075900 Sobic002G075900 Sobic003G397900--Sobic002G075900 Sobic003G397900--Sobic001G445500 Sobic003G397900--Sobic001G151600 Sobic001G015400 Sobic001G015400 Sobic003G397900--Sobic001G015400 Sobic010G223400 Sobic010G223400 Sobic003G397900--Sobic010G223400 Sobic003G005900--Sobic005G114500 Sobic003G005900--Sobic003G130900 Sobic003G005900--Sobic006G265600 Sobic003G293000 Sobic003G293000 Sobic003G005900--Sobic003G293000 Sobic003G005900--Sobic001G474400 Sobic003G005900--Sobic004G151200 Sobic003G005900--Sobic001G012900 Sobic002G014800 Sobic002G014800 Sobic003G005900--Sobic002G014800 Sobic009G207200 Sobic009G207200 Sobic003G005900--Sobic009G207200 Sobic002G160700 Sobic002G160700 Sobic001G151600--Sobic002G160700 Sobic001G151600--Sobic003G397900 Sobic001G151600--Sobic006G265600 Sobic001G151600--Sobic001G474400 Sobic002G070600 Sobic002G070600 Sobic001G151600--Sobic002G070600 Sobic009G003700 Sobic009G003700 Sobic001G151600--Sobic009G003700 Sobic001G151600--Sobic004G151200 Sobic002G199400 Sobic002G199400 Sobic001G151600--Sobic002G199400 Sobic001G117800 Sobic001G117800 Sobic001G151600--Sobic001G117800 Sobic003G346400 Sobic003G346400 Sobic001G445500--Sobic003G346400 Sobic001G097900 Sobic001G097900 Sobic001G445500--Sobic001G097900 Sobic001G445500--Sobic001G455000 Sobic001G445500--Sobic003G397900 Sobic006G203300 Sobic006G203300 Sobic001G445500--Sobic006G203300 Sobic010G171000 Sobic010G171000 Sobic001G445500--Sobic010G171000 Sobic001G445500--Sobic003G130900 Sobic001G374000 Sobic001G374000 Sobic001G445500--Sobic001G374000 Sobic005G114800 Sobic005G114800 Sobic001G445500--Sobic005G114800 Sobic004G100200 Sobic004G100200 Sobic005G022100--Sobic004G100200 Sobic007G005500 Sobic007G005500 Sobic005G022100--Sobic007G005500 Sobic005G022100--Sobic004G151200 Sobic008G085700 Sobic008G085700 Sobic005G022100--Sobic008G085700 Sobic007G042900 Sobic007G042900 Sobic005G022100--Sobic007G042900 Sobic005G022100--Sobic001G015400 Sobic005G022100--Sobic003G397900 Sobic001G161700 Sobic001G161700 Sobic005G022100--Sobic001G161700 Sobic005G022100--Sobic002G070600 Sobic006G265600--Sobic003G397900 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic006G265600--Sobic003G005900 Sobic006G265600--Sobic001G151600 Sobic006G265600--Sobic002G075900 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900
Octagon: transcription factors


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