Gene annotation
Transcriptome id Sobic.004G034300.1
Synonym Sb04g002960
Functional annotation transducin family protein, putative, expressed
UniProt A0A194YNK9 , C6JS22
Pfam -
Panther DB PTHR14593
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G33530 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os02g04440.2 : transducin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a018911
Brachypodium KQJ93221
Barley HORVU6Hr1G018790.20 , HORVU6Hr1G018790.21 , HORVU6Hr1G018790.5 , HORVU6Hr1G018790.15 , HORVU6Hr1G018790.14 , HORVU6Hr1G018790.17 , HORVU6Hr1G018790.16 , HORVU6Hr1G018790.11 , HORVU6Hr1G018790.10 , HORVU6Hr1G018790.13 , HORVU6Hr1G018790.12 , HORVU6Hr1G018790.19 , HORVU6Hr1G018790.18 , HORVU6Hr1G018790.1 , HORVU6Hr1G018790.3 , HORVU6Hr1G018790.2 , HORVU6Hr1G018790.4 , HORVU6Hr1G018790.7 , HORVU6Hr1G018790.6 , HORVU6Hr1G018790.9 , HORVU6Hr1G018790.8
Wheat TraesCS6A02G104800 , TraesCS6B02G134000 , TraesCS6B02G134000 , TraesCS6D02G093700
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
2 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
3 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
4 Sobic.008G072200 coatomer subunit delta, putative, expressed -
5 Sobic.005G059500 expressed protein -
6 Sobic.009G118900 expressed protein -
7 Sobic.003G334700 HEAT, putative, expressed K16803: CKAP5, cytoskeleton-associated protein 5
8 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
9 Sobic.001G012900 brefeldin A-sensitive Golgi protein-like, putative, expressed -
10 Sobic.001G533100 GHMP kinases ATP-binding protein, putative, expressed K05305: fucokinase
11 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
12 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
13 Sobic.004G174700 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
14 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
15 Sobic.001G437400 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
16 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
17 Sobic.002G070300 expressed protein -
18 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
19 Sobic.003G293000 expressed protein -
20 Sobic.004G151200 RNA-binding protein-like, putative, expressed -


Gene co-expression network
sample Sobic004G034300 Sobic004G034300 Sobic004G336300 Sobic004G336300 Sobic004G034300--Sobic004G336300 Sobic010G178600 Sobic010G178600 Sobic004G034300--Sobic010G178600 Sobic002G070600 Sobic002G070600 Sobic004G034300--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic004G034300--Sobic008G072200 Sobic005G059500 Sobic005G059500 Sobic004G034300--Sobic005G059500 Sobic009G118900 Sobic009G118900 Sobic004G034300--Sobic009G118900 Sobic003G334700 Sobic003G334700 Sobic004G034300--Sobic003G334700 Sobic004G212100 Sobic004G212100 Sobic004G034300--Sobic004G212100 Sobic001G012900 Sobic001G012900 Sobic004G034300--Sobic001G012900 Sobic004G336300--Sobic008G072200 Sobic004G336300--Sobic004G034300 Sobic004G336300--Sobic002G070600 Sobic004G336300--Sobic009G118900 Sobic001G117800 Sobic001G117800 Sobic004G336300--Sobic001G117800 Sobic004G336300--Sobic003G334700 Sobic004G174700 Sobic004G174700 Sobic004G336300--Sobic004G174700 Sobic004G336300--Sobic010G178600 Sobic001G437400 Sobic001G437400 Sobic004G336300--Sobic001G437400 Sobic010G178600--Sobic004G174700 Sobic010G178600--Sobic009G118900 Sobic010G178600--Sobic004G034300 Sobic010G178600--Sobic002G070600 Sobic010G178600--Sobic008G072200 Sobic003G134800 Sobic003G134800 Sobic010G178600--Sobic003G134800 Sobic010G178600--Sobic004G336300 Sobic010G178600--Sobic001G117800 Sobic003G029600 Sobic003G029600 Sobic010G178600--Sobic003G029600 Sobic002G070600--Sobic008G072200 Sobic002G070600--Sobic001G117800 Sobic001G161700 Sobic001G161700 Sobic002G070600--Sobic001G161700 Sobic008G085700 Sobic008G085700 Sobic002G070600--Sobic008G085700 Sobic002G070600--Sobic004G336300 Sobic002G070600--Sobic003G029600 Sobic006G021700 Sobic006G021700 Sobic002G070600--Sobic006G021700 Sobic002G070600--Sobic009G118900 Sobic002G070600--Sobic010G178600 Sobic008G072200--Sobic002G070600 Sobic008G072200--Sobic001G161700 Sobic008G072200--Sobic004G336300 Sobic001G115700 Sobic001G115700 Sobic008G072200--Sobic001G115700 Sobic008G072200--Sobic001G117800 Sobic002G029300 Sobic002G029300 Sobic008G072200--Sobic002G029300 Sobic001G490500 Sobic001G490500 Sobic008G072200--Sobic001G490500 Sobic008G072200--Sobic003G134800 Sobic008G072200--Sobic008G085700 Sobic005G059500--Sobic006G021700 Sobic001G118000 Sobic001G118000 Sobic005G059500--Sobic001G118000 Sobic010G223400 Sobic010G223400 Sobic005G059500--Sobic010G223400 Sobic005G059500--Sobic001G012900 Sobic003G346400 Sobic003G346400 Sobic005G059500--Sobic003G346400 Sobic005G114500 Sobic005G114500 Sobic005G059500--Sobic005G114500 Sobic001G474400 Sobic001G474400 Sobic005G059500--Sobic001G474400 Sobic009G122500 Sobic009G122500 Sobic005G059500--Sobic009G122500 Sobic005G059500--Sobic002G070600 Sobic009G118900--Sobic001G117800 Sobic002G340900 Sobic002G340900 Sobic009G118900--Sobic002G340900 Sobic009G118900--Sobic001G437400 Sobic009G118900--Sobic010G178600 Sobic009G118900--Sobic003G029600 Sobic009G118900--Sobic002G070600 Sobic009G118900--Sobic004G174700 Sobic009G118900--Sobic004G336300 Sobic009G118900--Sobic003G334700 Sobic010G139500 Sobic010G139500 Sobic003G334700--Sobic010G139500 Sobic003G334700--Sobic001G437400 Sobic003G314700 Sobic003G314700 Sobic003G334700--Sobic003G314700 Sobic003G334700--Sobic001G118000 Sobic003G334700--Sobic005G059500 Sobic002G119600 Sobic002G119600 Sobic003G334700--Sobic002G119600 Sobic003G293000 Sobic003G293000 Sobic003G334700--Sobic003G293000 Sobic003G334700--Sobic004G336300 Sobic010G000800 Sobic010G000800 Sobic003G334700--Sobic010G000800 Sobic002G367800 Sobic002G367800 Sobic004G212100--Sobic002G367800 Sobic001G011000 Sobic001G011000 Sobic004G212100--Sobic001G011000 Sobic009G041800 Sobic009G041800 Sobic004G212100--Sobic009G041800 Sobic003G388900 Sobic003G388900 Sobic004G212100--Sobic003G388900 Sobic002G070300 Sobic002G070300 Sobic004G212100--Sobic002G070300 Sobic004G212100--Sobic001G161700 Sobic004G212100--Sobic004G034300 Sobic001G522000 Sobic001G522000 Sobic004G212100--Sobic001G522000 Sobic004G212100--Sobic001G490500 Sobic001G012900--Sobic003G293000 Sobic001G193100 Sobic001G193100 Sobic001G012900--Sobic001G193100 Sobic001G012900--Sobic005G059500 Sobic001G012900--Sobic001G161700 Sobic004G060300 Sobic004G060300 Sobic001G012900--Sobic004G060300 Sobic001G012900--Sobic010G223400 Sobic001G012900--Sobic003G346400 Sobic001G335000 Sobic001G335000 Sobic001G012900--Sobic001G335000 Sobic001G012900--Sobic009G122500
Octagon: transcription factors


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