Gene annotation
Transcriptome id Sobic.001G117800.1
Synonym Sb01g010390
Functional annotation coatomer alpha subunit, putative, expressed
UniProt C5WN40
Pfam PF06957 PF04053 PF00400
Panther DB PTHR19876:SF5 PTHR19876
NCBI CDD -
KEGG Orthology K05236; COPA, coatomer subunit alpha
Gene Ontology GO:0005198; structural molecule activity GO:0006886intracellular protein transport GO:0016192vesicle-mediated transport GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G62020 : Coatomer, alpha subunit
RAP-DB (Rice) LOC_Os09g04110.2 : coatomer alpha subunit, putative, expressed
MaizeGDB (Corn) Zm00025a016997 , Zm00025a022956 , Zm00025a007843
Brachypodium PNT78388 , KQK24161 , KQK10707 , KQK10706 , KQK10705 , KQK10708
Barley HORVU7Hr1G111160.1 , HORVU5Hr1G028810.2 , HORVU5Hr1G028810.3 , HORVU5Hr1G028810.1 , HORVU5Hr1G028810.4 , HORVU5Hr1G028810.5 , HORVU4Hr1G088390.6 , HORVU4Hr1G088390.4 , HORVU4Hr1G088390.5 , HORVU4Hr1G088390.2 , HORVU4Hr1G088390.3 , HORVU4Hr1G088390.1 , HORVU4Hr1G007520.1 , HORVU0Hr1G010890.4 , HORVU0Hr1G010890.3 , HORVU4Hr1G007520.3 , HORVU0Hr1G010890.1 , HORVU0Hr1G010890.2 , HORVU4Hr1G007520.2
Wheat TraesCS5A02G540800 , TraesCS5A02G540800 , TraesCS4D02G363900 , TraesCS4D02G363900 , TraesCS4B02G373400 , TraesCS4B02G046300 , TraesCS4D02G045800 , TraesCS4A02G268100
Populus -


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cDNA sequences
Sobic.001G117800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
2 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
3 Sobic.009G118900 expressed protein -
4 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
5 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
6 Sobic.008G072200 coatomer subunit delta, putative, expressed -
7 Sobic.003G314700 expressed protein -
8 Sobic.009G120500 golgi transport complex protein-related, putative, expressed -
9 Sobic.001G437400 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
10 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
11 Sobic.008G124800 expressed protein -
12 Sobic.008G085700 exocyst complex component 5, putative, expressed -
13 Sobic.007G145400 expressed protein -
14 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -
15 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
16 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
17 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
18 Sobic.010G223400 expressed protein -
19 Sobic.001G118200 CASP, putative, expressed K09313: homeobox protein cut-like
20 Sobic.005G059500 expressed protein -


Gene co-expression network
sample Sobic001G117800 Sobic001G117800 Sobic003G029600 Sobic003G029600 Sobic001G117800--Sobic003G029600 Sobic002G070600 Sobic002G070600 Sobic001G117800--Sobic002G070600 Sobic009G118900 Sobic009G118900 Sobic001G117800--Sobic009G118900 Sobic002G340900 Sobic002G340900 Sobic001G117800--Sobic002G340900 Sobic001G474400 Sobic001G474400 Sobic001G117800--Sobic001G474400 Sobic008G072200 Sobic008G072200 Sobic001G117800--Sobic008G072200 Sobic003G314700 Sobic003G314700 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G437400 Sobic001G437400 Sobic001G117800--Sobic001G437400 Sobic003G029600--Sobic001G117800 Sobic003G029600--Sobic003G314700 Sobic003G029600--Sobic002G070600 Sobic003G029600--Sobic002G340900 Sobic001G301200 Sobic001G301200 Sobic003G029600--Sobic001G301200 Sobic001G449900 Sobic001G449900 Sobic003G029600--Sobic001G449900 Sobic008G124800 Sobic008G124800 Sobic003G029600--Sobic008G124800 Sobic003G029600--Sobic009G118900 Sobic003G029600--Sobic001G437400 Sobic002G070600--Sobic008G072200 Sobic002G070600--Sobic001G117800 Sobic001G161700 Sobic001G161700 Sobic002G070600--Sobic001G161700 Sobic008G085700 Sobic008G085700 Sobic002G070600--Sobic008G085700 Sobic004G336300 Sobic004G336300 Sobic002G070600--Sobic004G336300 Sobic002G070600--Sobic003G029600 Sobic006G021700 Sobic006G021700 Sobic002G070600--Sobic006G021700 Sobic002G070600--Sobic009G118900 Sobic010G178600 Sobic010G178600 Sobic002G070600--Sobic010G178600 Sobic009G118900--Sobic001G117800 Sobic009G118900--Sobic002G340900 Sobic009G118900--Sobic001G437400 Sobic009G118900--Sobic010G178600 Sobic009G118900--Sobic003G029600 Sobic009G118900--Sobic002G070600 Sobic004G174700 Sobic004G174700 Sobic009G118900--Sobic004G174700 Sobic009G118900--Sobic004G336300 Sobic003G334700 Sobic003G334700 Sobic009G118900--Sobic003G334700 Sobic002G340900--Sobic008G124800 Sobic002G340900--Sobic001G437400 Sobic002G340900--Sobic006G021700 Sobic004G053500 Sobic004G053500 Sobic002G340900--Sobic004G053500 Sobic002G340900--Sobic001G117800 Sobic002G340900--Sobic009G118900 Sobic002G340900--Sobic003G029600 Sobic004G223300 Sobic004G223300 Sobic002G340900--Sobic004G223300 Sobic002G340900--Sobic001G474400 Sobic005G110499 Sobic005G110499 Sobic001G474400--Sobic005G110499 Sobic003G397900 Sobic003G397900 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G097900 Sobic001G097900 Sobic001G474400--Sobic001G097900 Sobic005G114500 Sobic005G114500 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic010G223400 Sobic010G223400 Sobic001G474400--Sobic010G223400 Sobic001G467100 Sobic001G467100 Sobic001G474400--Sobic001G467100 Sobic006G265600 Sobic006G265600 Sobic001G474400--Sobic006G265600 Sobic008G072200--Sobic002G070600 Sobic008G072200--Sobic001G161700 Sobic008G072200--Sobic004G336300 Sobic001G115700 Sobic001G115700 Sobic008G072200--Sobic001G115700 Sobic008G072200--Sobic001G117800 Sobic002G029300 Sobic002G029300 Sobic008G072200--Sobic002G029300 Sobic001G490500 Sobic001G490500 Sobic008G072200--Sobic001G490500 Sobic003G134800 Sobic003G134800 Sobic008G072200--Sobic003G134800 Sobic008G072200--Sobic008G085700 Sobic003G314700--Sobic003G029600 Sobic003G314700--Sobic008G124800 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G405500 Sobic003G405500 Sobic003G314700--Sobic003G405500 Sobic007G019300 Sobic007G019300 Sobic003G314700--Sobic007G019300 Sobic004G204100 Sobic004G204100 Sobic003G314700--Sobic004G204100 Sobic001G426600 Sobic001G426600 Sobic003G314700--Sobic001G426600 Sobic002G412700 Sobic002G412700 Sobic003G314700--Sobic002G412700 Sobic009G120500--Sobic001G117800 Sobic009G120500--Sobic003G240700 Sobic009G120500--Sobic003G314700 Sobic009G120500--Sobic001G474400 Sobic009G120500--Sobic006G265600 Sobic009G120500--Sobic003G029600 Sobic004G358900 Sobic004G358900 Sobic009G120500--Sobic004G358900 Sobic005G059500 Sobic005G059500 Sobic009G120500--Sobic005G059500 Sobic009G120500--Sobic001G449900 Sobic001G437400--Sobic002G340900 Sobic001G437400--Sobic003G314700 Sobic003G250900 Sobic003G250900 Sobic001G437400--Sobic003G250900 Sobic001G437400--Sobic009G118900 Sobic001G437400--Sobic003G029600 Sobic001G437400--Sobic001G117800 Sobic001G437400--Sobic003G334700 Sobic001G437400--Sobic008G124800 Sobic001G437400--Sobic007G019300
Octagon: transcription factors


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