Gene annotation
Transcriptome id Sobic.008G072200.1
Synonym Sb08g006370
Functional annotation coatomer subunit delta, putative, expressed
UniProt C5YTK4
Pfam PF00928
Panther DB PTHR10121 PTHR10121:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05010 : clathrin adaptor complexes medium subunit family protein
RAP-DB (Rice) LOC_Os05g24601.1 : coatomer subunit delta, putative, expressed
MaizeGDB (Corn) Zm00025a054433 , Zm00025a025645
Brachypodium KQJ98012
Barley HORVU1Hr1G062650.8 , HORVU1Hr1G062650.9 , HORVU1Hr1G062650.2 , HORVU1Hr1G062650.3 , HORVU1Hr1G062650.1 , HORVU1Hr1G062650.4 , HORVU1Hr1G062650.6 , HORVU1Hr1G062650.7 , HORVU1Hr1G062650.5 , HORVU1Hr1G062650.10 , HORVU1Hr1G062650.11 , HORVU1Hr1G062650.12 , HORVU1Hr1G062650.13 , HORVU1Hr1G062650.14 , HORVU1Hr1G062650.15
Wheat TraesCS1B02G257500 , TraesCS1B02G257500 , TraesCS1D02G246200 , TraesCS1D02G246200 , TraesCS1D02G246200 , TraesCS1A02G246900
Populus -


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cDNA sequences
Sobic.008G072200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
2 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
3 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
4 Sobic.001G115700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K03934: NADH dehydrogenase (ubiquinone) Fe-S protein 1
5 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
6 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
7 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -
8 Sobic.003G134800 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
9 Sobic.008G085700 exocyst complex component 5, putative, expressed -
10 Sobic.004G034300 transducin family protein, putative, expressed -
11 Sobic.001G023100 ACBP4, putative, expressed -
12 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
13 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
14 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
15 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
16 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
17 Sobic.007G161200 expressed protein -
18 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
19 Sobic.010G223400 expressed protein -
20 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha


Gene co-expression network
sample Sobic008G072200 Sobic008G072200 Sobic002G070600 Sobic002G070600 Sobic008G072200--Sobic002G070600 Sobic001G161700 Sobic001G161700 Sobic008G072200--Sobic001G161700 Sobic004G336300 Sobic004G336300 Sobic008G072200--Sobic004G336300 Sobic001G115700 Sobic001G115700 Sobic008G072200--Sobic001G115700 Sobic001G117800 Sobic001G117800 Sobic008G072200--Sobic001G117800 Sobic002G029300 Sobic002G029300 Sobic008G072200--Sobic002G029300 Sobic001G490500 Sobic001G490500 Sobic008G072200--Sobic001G490500 Sobic003G134800 Sobic003G134800 Sobic008G072200--Sobic003G134800 Sobic008G085700 Sobic008G085700 Sobic008G072200--Sobic008G085700 Sobic002G070600--Sobic008G072200 Sobic002G070600--Sobic001G117800 Sobic002G070600--Sobic001G161700 Sobic002G070600--Sobic008G085700 Sobic002G070600--Sobic004G336300 Sobic003G029600 Sobic003G029600 Sobic002G070600--Sobic003G029600 Sobic006G021700 Sobic006G021700 Sobic002G070600--Sobic006G021700 Sobic009G118900 Sobic009G118900 Sobic002G070600--Sobic009G118900 Sobic010G178600 Sobic010G178600 Sobic002G070600--Sobic010G178600 Sobic001G161700--Sobic002G070600 Sobic001G161700--Sobic008G072200 Sobic001G161700--Sobic001G490500 Sobic001G012900 Sobic001G012900 Sobic001G161700--Sobic001G012900 Sobic001G023100 Sobic001G023100 Sobic001G161700--Sobic001G023100 Sobic003G346400 Sobic003G346400 Sobic001G161700--Sobic003G346400 Sobic004G000100 Sobic004G000100 Sobic001G161700--Sobic004G000100 Sobic004G254800 Sobic004G254800 Sobic001G161700--Sobic004G254800 Sobic001G161700--Sobic008G085700 Sobic004G336300--Sobic008G072200 Sobic004G034300 Sobic004G034300 Sobic004G336300--Sobic004G034300 Sobic004G336300--Sobic002G070600 Sobic004G336300--Sobic009G118900 Sobic004G336300--Sobic001G117800 Sobic003G334700 Sobic003G334700 Sobic004G336300--Sobic003G334700 Sobic004G174700 Sobic004G174700 Sobic004G336300--Sobic004G174700 Sobic004G336300--Sobic010G178600 Sobic001G437400 Sobic001G437400 Sobic004G336300--Sobic001G437400 Sobic001G458800 Sobic001G458800 Sobic001G115700--Sobic001G458800 Sobic003G034900 Sobic003G034900 Sobic001G115700--Sobic003G034900 Sobic001G465400 Sobic001G465400 Sobic001G115700--Sobic001G465400 Sobic001G115700--Sobic008G072200 Sobic004G347600 Sobic004G347600 Sobic001G115700--Sobic004G347600 Sobic005G018800 Sobic005G018800 Sobic001G115700--Sobic005G018800 Sobic009G191400 Sobic009G191400 Sobic001G115700--Sobic009G191400 Sobic003G200800 Sobic003G200800 Sobic001G115700--Sobic003G200800 Sobic002G186300 Sobic002G186300 Sobic001G115700--Sobic002G186300 Sobic001G117800--Sobic003G029600 Sobic001G117800--Sobic002G070600 Sobic001G117800--Sobic009G118900 Sobic002G340900 Sobic002G340900 Sobic001G117800--Sobic002G340900 Sobic001G474400 Sobic001G474400 Sobic001G117800--Sobic001G474400 Sobic001G117800--Sobic008G072200 Sobic003G314700 Sobic003G314700 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G117800--Sobic001G437400 Sobic002G029300--Sobic001G023100 Sobic007G173700 Sobic007G173700 Sobic002G029300--Sobic007G173700 Sobic004G031800 Sobic004G031800 Sobic002G029300--Sobic004G031800 Sobic002G029300--Sobic008G072200 Sobic001G010700 Sobic001G010700 Sobic002G029300--Sobic001G010700 Sobic009G226400 Sobic009G226400 Sobic002G029300--Sobic009G226400 Sobic002G029300--Sobic001G161700 Sobic002G141700 Sobic002G141700 Sobic002G029300--Sobic002G141700 Sobic006G056200 Sobic006G056200 Sobic002G029300--Sobic006G056200 Sobic001G490500--Sobic001G161700 Sobic001G220900 Sobic001G220900 Sobic001G490500--Sobic001G220900 Sobic001G490500--Sobic001G117800 Sobic001G490500--Sobic002G070600 Sobic001G490500--Sobic008G072200 Sobic001G077900 Sobic001G077900 Sobic001G490500--Sobic001G077900 Sobic001G522000 Sobic001G522000 Sobic001G490500--Sobic001G522000 Sobic001G338400 Sobic001G338400 Sobic001G490500--Sobic001G338400 Sobic001G490500--Sobic003G029600 Sobic003G134800--Sobic002G070600 Sobic003G134800--Sobic008G072200 Sobic003G134800--Sobic002G141700 Sobic003G134800--Sobic010G178600 Sobic003G134800--Sobic001G117800 Sobic002G423500 Sobic002G423500 Sobic003G134800--Sobic002G423500 Sobic003G134800--Sobic001G220900 Sobic001G151600 Sobic001G151600 Sobic003G134800--Sobic001G151600 Sobic003G143700 Sobic003G143700 Sobic003G134800--Sobic003G143700 Sobic002G020700 Sobic002G020700 Sobic008G085700--Sobic002G020700 Sobic001G449900 Sobic001G449900 Sobic008G085700--Sobic001G449900 Sobic008G085700--Sobic002G070600 Sobic010G020400 Sobic010G020400 Sobic008G085700--Sobic010G020400 Sobic008G055900 Sobic008G055900 Sobic008G085700--Sobic008G055900 Sobic005G110499 Sobic005G110499 Sobic008G085700--Sobic005G110499 Sobic001G049400 Sobic001G049400 Sobic008G085700--Sobic001G049400 Sobic008G085700--Sobic001G161700 Sobic010G192600 Sobic010G192600 Sobic008G085700--Sobic010G192600
Octagon: transcription factors


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