Gene annotation
Transcriptome id Sobic.010G178600.1,Sobic.010G178600.2
Synonym Sb10g023020
Functional annotation coatomer subunit beta, putative, expressed
UniProt A0A1W0VTN8 , A0A1W0VTN0
Pfam PF00400 PF04053
Panther DB PTHR19876 PTHR19876:SF6
NCBI CDD -
KEGG Orthology K17302; COPB2, coatomer subunit beta'
Gene Ontology GO:0005515; protein binding GO:0016192vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT1G52360 : Coatomer, beta\' subunit
RAP-DB (Rice) LOC_Os02g11830.2 : coatomer subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a051254 , Zm00025a034592 , Zm00025a020227
Brachypodium KQJ93991 , KQJ93992
Barley -
Wheat TraesCS6A02G179300 , TraesCS6D02G165800 , TraesCS6D02G165800 , TraesCS6D02G165800 , TraesCS6A02G130600 , TraesCS6A02G179300 , TraesCS6A02G179300 , TraesCS6B02G206500 , TraesCS6B02G206500 , TraesCS6B02G206500 , TraesCS6B02G206500
Populus PNT55198 , PNT55199 , PNT55196 , PNT55197 , PNT55194 , PNT55195 , PNT55192 , PNT55193


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G174700 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
2 Sobic.009G118900 expressed protein -
3 Sobic.004G034300 transducin family protein, putative, expressed -
4 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
5 Sobic.008G072200 coatomer subunit delta, putative, expressed -
6 Sobic.003G134800 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
7 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
8 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
9 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
10 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
12 Sobic.003G159700 ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
13 Sobic.001G220900 adaptin ear-binding coat-associated protein 2, putative, expressed -
14 Sobic.010G216000 villin protein, putative, expressed K05768: gelsolin
15 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
16 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
17 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -
18 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
19 Sobic.001G151600 OsRhmbd9 - Putative Rhomboid homologue, expressed -
20 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase


Gene co-expression network
sample Sobic010G178600 Sobic010G178600 Sobic004G174700 Sobic004G174700 Sobic010G178600--Sobic004G174700 Sobic009G118900 Sobic009G118900 Sobic010G178600--Sobic009G118900 Sobic004G034300 Sobic004G034300 Sobic010G178600--Sobic004G034300 Sobic002G070600 Sobic002G070600 Sobic010G178600--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic010G178600--Sobic008G072200 Sobic003G134800 Sobic003G134800 Sobic010G178600--Sobic003G134800 Sobic004G336300 Sobic004G336300 Sobic010G178600--Sobic004G336300 Sobic001G117800 Sobic001G117800 Sobic010G178600--Sobic001G117800 Sobic003G029600 Sobic003G029600 Sobic010G178600--Sobic003G029600 Sobic004G174700--Sobic010G178600 Sobic004G174700--Sobic009G118900 Sobic004G174700--Sobic004G336300 Sobic004G174700--Sobic004G034300 Sobic004G174700--Sobic002G070600 Sobic001G380600 Sobic001G380600 Sobic004G174700--Sobic001G380600 Sobic004G348600 Sobic004G348600 Sobic004G174700--Sobic004G348600 Sobic001G011000 Sobic001G011000 Sobic004G174700--Sobic001G011000 Sobic004G212100 Sobic004G212100 Sobic004G174700--Sobic004G212100 Sobic009G118900--Sobic001G117800 Sobic002G340900 Sobic002G340900 Sobic009G118900--Sobic002G340900 Sobic001G437400 Sobic001G437400 Sobic009G118900--Sobic001G437400 Sobic009G118900--Sobic010G178600 Sobic009G118900--Sobic003G029600 Sobic009G118900--Sobic002G070600 Sobic009G118900--Sobic004G174700 Sobic009G118900--Sobic004G336300 Sobic003G334700 Sobic003G334700 Sobic009G118900--Sobic003G334700 Sobic004G034300--Sobic004G336300 Sobic004G034300--Sobic010G178600 Sobic004G034300--Sobic002G070600 Sobic004G034300--Sobic008G072200 Sobic005G059500 Sobic005G059500 Sobic004G034300--Sobic005G059500 Sobic004G034300--Sobic009G118900 Sobic004G034300--Sobic003G334700 Sobic004G034300--Sobic004G212100 Sobic001G012900 Sobic001G012900 Sobic004G034300--Sobic001G012900 Sobic002G070600--Sobic008G072200 Sobic002G070600--Sobic001G117800 Sobic001G161700 Sobic001G161700 Sobic002G070600--Sobic001G161700 Sobic008G085700 Sobic008G085700 Sobic002G070600--Sobic008G085700 Sobic002G070600--Sobic004G336300 Sobic002G070600--Sobic003G029600 Sobic006G021700 Sobic006G021700 Sobic002G070600--Sobic006G021700 Sobic002G070600--Sobic009G118900 Sobic002G070600--Sobic010G178600 Sobic008G072200--Sobic002G070600 Sobic008G072200--Sobic001G161700 Sobic008G072200--Sobic004G336300 Sobic001G115700 Sobic001G115700 Sobic008G072200--Sobic001G115700 Sobic008G072200--Sobic001G117800 Sobic002G029300 Sobic002G029300 Sobic008G072200--Sobic002G029300 Sobic001G490500 Sobic001G490500 Sobic008G072200--Sobic001G490500 Sobic008G072200--Sobic003G134800 Sobic008G072200--Sobic008G085700 Sobic003G134800--Sobic002G070600 Sobic003G134800--Sobic008G072200 Sobic002G141700 Sobic002G141700 Sobic003G134800--Sobic002G141700 Sobic003G134800--Sobic010G178600 Sobic003G134800--Sobic001G117800 Sobic002G423500 Sobic002G423500 Sobic003G134800--Sobic002G423500 Sobic001G220900 Sobic001G220900 Sobic003G134800--Sobic001G220900 Sobic001G151600 Sobic001G151600 Sobic003G134800--Sobic001G151600 Sobic003G143700 Sobic003G143700 Sobic003G134800--Sobic003G143700 Sobic004G336300--Sobic008G072200 Sobic004G336300--Sobic004G034300 Sobic004G336300--Sobic002G070600 Sobic004G336300--Sobic009G118900 Sobic004G336300--Sobic001G117800 Sobic004G336300--Sobic003G334700 Sobic004G336300--Sobic004G174700 Sobic004G336300--Sobic010G178600 Sobic004G336300--Sobic001G437400 Sobic001G117800--Sobic003G029600 Sobic001G117800--Sobic002G070600 Sobic001G117800--Sobic009G118900 Sobic001G117800--Sobic002G340900 Sobic001G474400 Sobic001G474400 Sobic001G117800--Sobic001G474400 Sobic001G117800--Sobic008G072200 Sobic003G314700 Sobic003G314700 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G117800--Sobic001G437400 Sobic003G029600--Sobic001G117800 Sobic003G029600--Sobic003G314700 Sobic003G029600--Sobic002G070600 Sobic003G029600--Sobic002G340900 Sobic001G301200 Sobic001G301200 Sobic003G029600--Sobic001G301200 Sobic001G449900 Sobic001G449900 Sobic003G029600--Sobic001G449900 Sobic008G124800 Sobic008G124800 Sobic003G029600--Sobic008G124800 Sobic003G029600--Sobic009G118900 Sobic003G029600--Sobic001G437400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.