Gene annotation
Transcriptome id Sobic.001G151600.1
Synonym ATRBL15, Sb01g013170, RBL15
Functional annotation OsRhmbd9 - Putative Rhomboid homologue, expressed
UniProt C5WR29
Pfam PF00627 PF01694
Panther DB PTHR12917 PTHR12917:SF19
NCBI CDD KOG2632; Rhomboid family proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G58460 : RHOMBOID-like protein 15
RAP-DB (Rice) LOC_Os03g44830.1 : OsRhmbd9 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a007583
Brachypodium KQK13935 , KQK13937 , KQK13936 , KQK13939 , KQK13938
Barley HORVU5Hr1G092250.9 , HORVU5Hr1G092250.11 , HORVU5Hr1G092250.10 , HORVU5Hr1G092250.13 , HORVU5Hr1G092250.12 , HORVU5Hr1G092250.14 , HORVU5Hr1G092250.5 , HORVU5Hr1G092250.4 , HORVU5Hr1G092250.6 , HORVU5Hr1G092250.3 , HORVU5Hr1G092250.2 , HORVU5Hr1G092250.8
Wheat TraesCS5A02G370500 , TraesCS5A02G370500 , TraesCS5A02G370500 , TraesCS5B02G372800 , TraesCS5B02G372800 , TraesCS5D02G380000 , TraesCS5D02G380000 , TraesCS5D02G380000 , TraesCS5D02G380000 , TraesCS5B02G372800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
2 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
3 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
4 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
5 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
6 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
7 Sobic.004G151200 RNA-binding protein-like, putative, expressed -
8 Sobic.002G199400 growth regulator related protein, putative, expressed -
9 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
10 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
11 Sobic.003G134800 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
12 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
13 Sobic.005G114500 growth regulator related protein, putative, expressed -
14 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
15 Sobic.002G075900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed K12670: oligosaccharyltransferase complex subunit beta
16 Sobic.002G150800 WD domain, G-beta repeat domain containing protein, expressed K16547: protein NEDD1
17 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
18 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
19 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
20 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein


Gene co-expression network
sample Sobic001G151600 Sobic001G151600 Sobic002G160700 Sobic002G160700 Sobic001G151600--Sobic002G160700 Sobic003G397900 Sobic003G397900 Sobic001G151600--Sobic003G397900 Sobic006G265600 Sobic006G265600 Sobic001G151600--Sobic006G265600 Sobic001G474400 Sobic001G474400 Sobic001G151600--Sobic001G474400 Sobic002G070600 Sobic002G070600 Sobic001G151600--Sobic002G070600 Sobic009G003700 Sobic009G003700 Sobic001G151600--Sobic009G003700 Sobic004G151200 Sobic004G151200 Sobic001G151600--Sobic004G151200 Sobic002G199400 Sobic002G199400 Sobic001G151600--Sobic002G199400 Sobic001G117800 Sobic001G117800 Sobic001G151600--Sobic001G117800 Sobic002G160700--Sobic001G151600 Sobic002G371600 Sobic002G371600 Sobic002G160700--Sobic002G371600 Sobic006G029100 Sobic006G029100 Sobic002G160700--Sobic006G029100 Sobic001G248100 Sobic001G248100 Sobic002G160700--Sobic001G248100 Sobic002G160700--Sobic006G265600 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic004G030400 Sobic004G030400 Sobic002G160700--Sobic004G030400 Sobic005G115500 Sobic005G115500 Sobic002G160700--Sobic005G115500 Sobic001G455000 Sobic001G455000 Sobic003G397900--Sobic001G455000 Sobic003G397900--Sobic006G265600 Sobic003G397900--Sobic001G474400 Sobic003G304400 Sobic003G304400 Sobic003G397900--Sobic003G304400 Sobic002G075900 Sobic002G075900 Sobic003G397900--Sobic002G075900 Sobic001G445500 Sobic001G445500 Sobic003G397900--Sobic001G445500 Sobic003G397900--Sobic001G151600 Sobic001G015400 Sobic001G015400 Sobic003G397900--Sobic001G015400 Sobic010G223400 Sobic010G223400 Sobic003G397900--Sobic010G223400 Sobic006G265600--Sobic003G397900 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic006G265600--Sobic001G151600 Sobic006G265600--Sobic002G075900 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900 Sobic005G110499 Sobic005G110499 Sobic001G474400--Sobic005G110499 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G097900 Sobic001G097900 Sobic001G474400--Sobic001G097900 Sobic005G114500 Sobic005G114500 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic001G474400--Sobic010G223400 Sobic001G467100 Sobic001G467100 Sobic001G474400--Sobic001G467100 Sobic001G474400--Sobic006G265600 Sobic008G072200 Sobic008G072200 Sobic002G070600--Sobic008G072200 Sobic002G070600--Sobic001G117800 Sobic001G161700 Sobic001G161700 Sobic002G070600--Sobic001G161700 Sobic008G085700 Sobic008G085700 Sobic002G070600--Sobic008G085700 Sobic004G336300 Sobic004G336300 Sobic002G070600--Sobic004G336300 Sobic003G029600 Sobic003G029600 Sobic002G070600--Sobic003G029600 Sobic006G021700 Sobic006G021700 Sobic002G070600--Sobic006G021700 Sobic009G118900 Sobic009G118900 Sobic002G070600--Sobic009G118900 Sobic010G178600 Sobic010G178600 Sobic002G070600--Sobic010G178600 Sobic009G003700--Sobic007G145400 Sobic003G050900 Sobic003G050900 Sobic009G003700--Sobic003G050900 Sobic009G003700--Sobic001G248100 Sobic001G097500 Sobic001G097500 Sobic009G003700--Sobic001G097500 Sobic001G118200 Sobic001G118200 Sobic009G003700--Sobic001G118200 Sobic009G003700--Sobic005G110499 Sobic004G053500 Sobic004G053500 Sobic009G003700--Sobic004G053500 Sobic004G147500 Sobic004G147500 Sobic009G003700--Sobic004G147500 Sobic002G340900 Sobic002G340900 Sobic009G003700--Sobic002G340900 Sobic004G151200--Sobic001G455000 Sobic004G277400 Sobic004G277400 Sobic004G151200--Sobic004G277400 Sobic003G130900 Sobic003G130900 Sobic004G151200--Sobic003G130900 Sobic004G151200--Sobic003G397900 Sobic004G151200--Sobic003G005900 Sobic004G151200--Sobic001G151600 Sobic004G151200--Sobic001G445500 Sobic005G022100 Sobic005G022100 Sobic004G151200--Sobic005G022100 Sobic004G151200--Sobic006G265600 Sobic002G199400--Sobic002G160700 Sobic002G199400--Sobic001G151600 Sobic001G469200 Sobic001G469200 Sobic002G199400--Sobic001G469200 Sobic001G358500 Sobic001G358500 Sobic002G199400--Sobic001G358500 Sobic006G259900 Sobic006G259900 Sobic002G199400--Sobic006G259900 Sobic006G282200 Sobic006G282200 Sobic002G199400--Sobic006G282200 Sobic005G175000 Sobic005G175000 Sobic002G199400--Sobic005G175000 Sobic002G199400--Sobic004G030400 Sobic005G144201 Sobic005G144201 Sobic002G199400--Sobic005G144201 Sobic001G117800--Sobic003G029600 Sobic001G117800--Sobic002G070600 Sobic001G117800--Sobic009G118900 Sobic001G117800--Sobic002G340900 Sobic001G117800--Sobic001G474400 Sobic001G117800--Sobic008G072200 Sobic003G314700 Sobic003G314700 Sobic001G117800--Sobic003G314700 Sobic001G117800--Sobic009G120500 Sobic001G437400 Sobic001G437400 Sobic001G117800--Sobic001G437400
Octagon: transcription factors


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