Gene annotation
Transcriptome id Sobic.002G160700.1
Synonym TEX1, AtTEX1, Sb02g020440, THO3
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5X8Y2
Pfam PF00400
Panther DB PTHR22839
NCBI CDD KOG1407; WD40 repeat protein
KEGG Orthology K12880; THO complex subunit 3
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G56130 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os09g12710.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046358
Brachypodium KQJ89762
Barley HORVU5Hr1G054250.10 , HORVU5Hr1G054250.9 , HORVU5Hr1G054250.8 , HORVU5Hr1G054250.7 , HORVU5Hr1G054250.6 , HORVU5Hr1G054250.5 , HORVU5Hr1G054250.4 , HORVU5Hr1G054250.3 , HORVU5Hr1G054250.2 , HORVU5Hr1G054250.1
Wheat TraesCS5A02G178200 , TraesCS5A02G178200 , TraesCS5A02G178200 , TraesCS5B02G175900 , TraesCS5B02G175900 , TraesCS5D02G182700 , TraesCS5D02G182700
Populus -


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cDNA sequences
Sobic.002G160700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G151600 OsRhmbd9 - Putative Rhomboid homologue, expressed -
2 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
3 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
4 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
5 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
6 Sobic.002G199400 growth regulator related protein, putative, expressed -
7 Sobic.002G408900 adenyl cyclase, putative, expressed -
8 Sobic.004G030400 expressed protein -
9 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
10 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
11 Sobic.004G356200 expressed protein -
12 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
13 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
14 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
15 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
16 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
17 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
19 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
20 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -


Gene co-expression network
sample Sobic002G160700 Sobic002G160700 Sobic001G151600 Sobic001G151600 Sobic002G160700--Sobic001G151600 Sobic002G371600 Sobic002G371600 Sobic002G160700--Sobic002G371600 Sobic006G029100 Sobic006G029100 Sobic002G160700--Sobic006G029100 Sobic001G248100 Sobic001G248100 Sobic002G160700--Sobic001G248100 Sobic006G265600 Sobic006G265600 Sobic002G160700--Sobic006G265600 Sobic002G199400 Sobic002G199400 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic004G030400 Sobic004G030400 Sobic002G160700--Sobic004G030400 Sobic005G115500 Sobic005G115500 Sobic002G160700--Sobic005G115500 Sobic001G151600--Sobic002G160700 Sobic003G397900 Sobic003G397900 Sobic001G151600--Sobic003G397900 Sobic001G151600--Sobic006G265600 Sobic001G474400 Sobic001G474400 Sobic001G151600--Sobic001G474400 Sobic002G070600 Sobic002G070600 Sobic001G151600--Sobic002G070600 Sobic009G003700 Sobic009G003700 Sobic001G151600--Sobic009G003700 Sobic004G151200 Sobic004G151200 Sobic001G151600--Sobic004G151200 Sobic001G151600--Sobic002G199400 Sobic001G117800 Sobic001G117800 Sobic001G151600--Sobic001G117800 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic006G029100--Sobic002G371600 Sobic006G029100--Sobic002G160700 Sobic002G386600 Sobic002G386600 Sobic006G029100--Sobic002G386600 Sobic004G141800 Sobic004G141800 Sobic006G029100--Sobic004G141800 Sobic003G256800 Sobic003G256800 Sobic006G029100--Sobic003G256800 Sobic006G029100--Sobic003G308500 Sobic006G029100--Sobic001G373800 Sobic001G200200 Sobic001G200200 Sobic006G029100--Sobic001G200200 Sobic010G070600 Sobic010G070600 Sobic006G029100--Sobic010G070600 Sobic002G412700 Sobic002G412700 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic001G248100--Sobic005G115500 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic003G405500 Sobic003G405500 Sobic001G248100--Sobic003G405500 Sobic006G265600--Sobic003G397900 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic006G265600--Sobic001G151600 Sobic002G075900 Sobic002G075900 Sobic006G265600--Sobic002G075900 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900 Sobic002G199400--Sobic002G160700 Sobic002G199400--Sobic001G151600 Sobic001G469200 Sobic001G469200 Sobic002G199400--Sobic001G469200 Sobic001G358500 Sobic001G358500 Sobic002G199400--Sobic001G358500 Sobic006G259900 Sobic006G259900 Sobic002G199400--Sobic006G259900 Sobic006G282200 Sobic006G282200 Sobic002G199400--Sobic006G282200 Sobic005G175000 Sobic005G175000 Sobic002G199400--Sobic005G175000 Sobic002G199400--Sobic004G030400 Sobic005G144201 Sobic005G144201 Sobic002G199400--Sobic005G144201 Sobic002G150700 Sobic002G150700 Sobic002G408900--Sobic002G150700 Sobic009G249800 Sobic009G249800 Sobic002G408900--Sobic009G249800 Sobic004G208500 Sobic004G208500 Sobic002G408900--Sobic004G208500 Sobic002G246700 Sobic002G246700 Sobic002G408900--Sobic002G246700 Sobic001G015400 Sobic001G015400 Sobic002G408900--Sobic001G015400 Sobic002G398700 Sobic002G398700 Sobic002G408900--Sobic002G398700 Sobic006G193300 Sobic006G193300 Sobic002G408900--Sobic006G193300 Sobic002G408900--Sobic002G160700 Sobic001G099900 Sobic001G099900 Sobic002G408900--Sobic001G099900 Sobic004G030400--Sobic002G160700 Sobic004G030400--Sobic004G356200 Sobic004G030400--Sobic001G200200 Sobic004G030400--Sobic002G199400 Sobic001G123600 Sobic001G123600 Sobic004G030400--Sobic001G123600 Sobic002G142700 Sobic002G142700 Sobic004G030400--Sobic002G142700 Sobic002G208400 Sobic002G208400 Sobic004G030400--Sobic002G208400 Sobic003G388000 Sobic003G388000 Sobic004G030400--Sobic003G388000 Sobic004G030400--Sobic002G386600 Sobic001G291800 Sobic001G291800 Sobic005G115500--Sobic001G291800 Sobic001G145400 Sobic001G145400 Sobic005G115500--Sobic001G145400 Sobic005G115500--Sobic001G248100 Sobic002G145800 Sobic002G145800 Sobic005G115500--Sobic002G145800 Sobic003G099300 Sobic003G099300 Sobic005G115500--Sobic003G099300 Sobic007G183300 Sobic007G183300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic002G430300 Sobic002G430300 Sobic005G115500--Sobic002G430300 Sobic001G051700 Sobic001G051700 Sobic005G115500--Sobic001G051700
Octagon: transcription factors


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