Gene annotation
Transcriptome id Sobic.004G356200.1
Synonym Sb04g038270
Functional annotation expressed protein
UniProt C5XWQ5
Pfam -
Panther DB PTHR33644 PTHR33644:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19895 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g58280.1 : expressed protein
MaizeGDB (Corn) Zm00025a022667
Brachypodium KQK02125
Barley HORVU6Hr1G094240.3 , HORVU6Hr1G094240.2 , HORVU6Hr1G094240.7 , HORVU6Hr1G094240.9 , HORVU6Hr1G094240.8 , HORVU6Hr1G094240.13 , HORVU6Hr1G094240.12 , HORVU6Hr1G094240.11 , HORVU6Hr1G094240.10 , HORVU6Hr1G094240.17 , HORVU6Hr1G094240.16 , HORVU6Hr1G094240.15 , HORVU6Hr1G094240.14 , HORVU6Hr1G094240.19 , HORVU6Hr1G094240.6 , HORVU6Hr1G094240.5 , HORVU6Hr1G094240.35 , HORVU6Hr1G094240.34 , HORVU6Hr1G094240.37 , HORVU6Hr1G094240.36 , HORVU6Hr1G094240.31 , HORVU6Hr1G094240.30 , HORVU6Hr1G094240.33 , HORVU6Hr1G094240.28 , HORVU6Hr1G094240.22 , HORVU6Hr1G094240.23 , HORVU6Hr1G094240.21 , HORVU6Hr1G094240.26 , HORVU6Hr1G094240.27 , HORVU6Hr1G094240.24 , HORVU6Hr1G094240.18
Wheat TraesCS6A02G415200 , TraesCS7B02G331900 , TraesCS6D02G400800 , TraesCS6D02G400800 , TraesCS6D02G400800 , TraesCS6A02G415200
Populus -


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cDNA sequences
Sobic.004G356200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
2 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
3 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
4 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
5 Sobic.002G137601 - -
6 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
7 Sobic.007G047600 expressed protein -
8 Sobic.004G030400 expressed protein -
9 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
10 Sobic.003G052800 RST1, putative, expressed -
11 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
12 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
13 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
14 Sobic.002G239601 - -
15 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
16 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
17 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
18 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
19 Sobic.006G245900 FAR1 family protein, expressed -
20 Sobic.002G125800 phosphoglucomutase, putative, expressed -


Gene co-expression network
sample Sobic004G356200 Sobic004G356200 Sobic001G200200 Sobic001G200200 Sobic004G356200--Sobic001G200200 Sobic002G371600 Sobic002G371600 Sobic004G356200--Sobic002G371600 Sobic005G031000 Sobic005G031000 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic002G160700 Sobic002G160700 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G030400 Sobic004G030400 Sobic004G356200--Sobic004G030400 Sobic001G085800 Sobic001G085800 Sobic004G356200--Sobic001G085800 Sobic001G200200--Sobic004G356200 Sobic001G200200--Sobic005G031000 Sobic002G386900 Sobic002G386900 Sobic001G200200--Sobic002G386900 Sobic001G200200--Sobic002G371600 Sobic001G200200--Sobic004G030400 Sobic006G181800 Sobic006G181800 Sobic001G200200--Sobic006G181800 Sobic006G191200 Sobic006G191200 Sobic001G200200--Sobic006G191200 Sobic006G029100 Sobic006G029100 Sobic001G200200--Sobic006G029100 Sobic002G125800 Sobic002G125800 Sobic001G200200--Sobic002G125800 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic005G031000--Sobic004G356200 Sobic005G031000--Sobic001G200200 Sobic008G059900 Sobic008G059900 Sobic005G031000--Sobic008G059900 Sobic005G031000--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic005G031000--Sobic001G434700 Sobic006G237000 Sobic006G237000 Sobic005G031000--Sobic006G237000 Sobic001G533100 Sobic001G533100 Sobic005G031000--Sobic001G533100 Sobic004G037200 Sobic004G037200 Sobic005G031000--Sobic004G037200 Sobic010G155600 Sobic010G155600 Sobic005G031000--Sobic010G155600 Sobic002G412700 Sobic002G412700 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G248100--Sobic005G115500 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic003G405500 Sobic003G405500 Sobic001G248100--Sobic003G405500 Sobic002G137601--Sobic004G356200 Sobic002G137601--Sobic002G412700 Sobic006G100800 Sobic006G100800 Sobic002G137601--Sobic006G100800 Sobic002G137601--Sobic007G047600 Sobic010G099800 Sobic010G099800 Sobic002G137601--Sobic010G099800 Sobic003G016500 Sobic003G016500 Sobic002G137601--Sobic003G016500 Sobic002G137601--Sobic001G533100 Sobic003G209400 Sobic003G209400 Sobic002G137601--Sobic003G209400 Sobic002G137601--Sobic001G248100 Sobic001G151600 Sobic001G151600 Sobic002G160700--Sobic001G151600 Sobic002G160700--Sobic002G371600 Sobic002G160700--Sobic006G029100 Sobic002G160700--Sobic001G248100 Sobic006G265600 Sobic006G265600 Sobic002G160700--Sobic006G265600 Sobic002G199400 Sobic002G199400 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic002G160700--Sobic004G030400 Sobic002G160700--Sobic005G115500 Sobic007G047600--Sobic002G412700 Sobic007G047600--Sobic007G145400 Sobic008G092800 Sobic008G092800 Sobic007G047600--Sobic008G092800 Sobic007G047600--Sobic004G356200 Sobic003G360300 Sobic003G360300 Sobic007G047600--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic007G047600--Sobic008G080500 Sobic006G280100 Sobic006G280100 Sobic007G047600--Sobic006G280100 Sobic002G119600 Sobic002G119600 Sobic007G047600--Sobic002G119600 Sobic001G467100 Sobic001G467100 Sobic007G047600--Sobic001G467100 Sobic004G030400--Sobic002G160700 Sobic004G030400--Sobic004G356200 Sobic004G030400--Sobic001G200200 Sobic004G030400--Sobic002G199400 Sobic001G123600 Sobic001G123600 Sobic004G030400--Sobic001G123600 Sobic002G142700 Sobic002G142700 Sobic004G030400--Sobic002G142700 Sobic002G208400 Sobic002G208400 Sobic004G030400--Sobic002G208400 Sobic003G388000 Sobic003G388000 Sobic004G030400--Sobic003G388000 Sobic002G386600 Sobic002G386600 Sobic004G030400--Sobic002G386600 Sobic003G246000 Sobic003G246000 Sobic001G085800--Sobic003G246000 Sobic001G085800--Sobic005G115500 Sobic002G364900 Sobic002G364900 Sobic001G085800--Sobic002G364900 Sobic001G085800--Sobic002G160700 Sobic002G145800 Sobic002G145800 Sobic001G085800--Sobic002G145800 Sobic006G058800 Sobic006G058800 Sobic001G085800--Sobic006G058800 Sobic001G085800--Sobic002G386600 Sobic001G085800--Sobic004G356200 Sobic001G469200 Sobic001G469200 Sobic001G085800--Sobic001G469200
Octagon: transcription factors


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