Gene annotation
Transcriptome id Sobic.002G239601.1
Synonym -
Functional annotation -
UniProt A0A1W0W5J7
Pfam PF00646
Panther DB PTHR31790 PTHR31790:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G07870 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os09g34200.1 : OsFBX338 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ90659 , PNT62312 , KQJ90657 , KQJ90658 , PNT64794 , PNT64795
Barley -
Wheat TraesCS5A02G254200 , TraesCS5A02G254200 , TraesCS5B02G253200 , TraesCS5B02G253200 , TraesCS5B02G253200 , TraesCS5B02G253100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
2 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
3 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
4 Sobic.004G356200 expressed protein -
5 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
6 Sobic.008G123300 AAA-type ATPase family protein, putative, expressed -
7 Sobic.003G360300 exostosin family domain containing protein, expressed -
8 Sobic.003G299500 expressed protein -
9 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
10 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
11 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
12 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
13 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
14 Sobic.001G495400 PPR repeat domain containing protein, putative, expressed -
15 Sobic.003G016500 histone-lysine N-methyltransferase ATX5, putative, expressed -
16 Sobic.001G417500 expressed protein -
17 Sobic.003G026200 expressed protein -
18 Sobic.004G030400 expressed protein -
19 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
20 Sobic.010G279300 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed -


Gene co-expression network
sample Sobic002G239601 Sobic002G239601 Sobic002G386900 Sobic002G386900 Sobic002G239601--Sobic002G386900 Sobic001G123600 Sobic001G123600 Sobic002G239601--Sobic001G123600 Sobic002G386600 Sobic002G386600 Sobic002G239601--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic002G239601--Sobic004G356200 Sobic007G034200 Sobic007G034200 Sobic002G239601--Sobic007G034200 Sobic008G123300 Sobic008G123300 Sobic002G239601--Sobic008G123300 Sobic003G360300 Sobic003G360300 Sobic002G239601--Sobic003G360300 Sobic003G299500 Sobic003G299500 Sobic002G239601--Sobic003G299500 Sobic001G200200 Sobic001G200200 Sobic002G239601--Sobic001G200200 Sobic002G386900--Sobic002G386600 Sobic004G097900 Sobic004G097900 Sobic002G386900--Sobic004G097900 Sobic002G386900--Sobic001G123600 Sobic006G191200 Sobic006G191200 Sobic002G386900--Sobic006G191200 Sobic002G386900--Sobic007G034200 Sobic001G051400 Sobic001G051400 Sobic002G386900--Sobic001G051400 Sobic002G386900--Sobic001G200200 Sobic002G386900--Sobic002G239601 Sobic002G292800 Sobic002G292800 Sobic002G386900--Sobic002G292800 Sobic001G123600--Sobic006G191200 Sobic001G229300 Sobic001G229300 Sobic001G123600--Sobic001G229300 Sobic001G123600--Sobic003G360300 Sobic001G123600--Sobic007G034200 Sobic001G123600--Sobic002G386900 Sobic010G269300 Sobic010G269300 Sobic001G123600--Sobic010G269300 Sobic009G120400 Sobic009G120400 Sobic001G123600--Sobic009G120400 Sobic001G123600--Sobic003G299500 Sobic003G010900 Sobic003G010900 Sobic001G123600--Sobic003G010900 Sobic002G386600--Sobic002G386900 Sobic006G029100 Sobic006G029100 Sobic002G386600--Sobic006G029100 Sobic004G141800 Sobic004G141800 Sobic002G386600--Sobic004G141800 Sobic006G265600 Sobic006G265600 Sobic002G386600--Sobic006G265600 Sobic002G398700 Sobic002G398700 Sobic002G386600--Sobic002G398700 Sobic002G160700 Sobic002G160700 Sobic002G386600--Sobic002G160700 Sobic001G085800 Sobic001G085800 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic003G246000 Sobic003G246000 Sobic002G386600--Sobic003G246000 Sobic004G356200--Sobic001G200200 Sobic002G371600 Sobic002G371600 Sobic004G356200--Sobic002G371600 Sobic005G031000 Sobic005G031000 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G030400 Sobic004G030400 Sobic004G356200--Sobic004G030400 Sobic004G356200--Sobic001G085800 Sobic007G034200--Sobic003G299500 Sobic007G034200--Sobic009G120400 Sobic007G034200--Sobic001G051400 Sobic007G034200--Sobic001G123600 Sobic003G194800 Sobic003G194800 Sobic007G034200--Sobic003G194800 Sobic007G034200--Sobic002G386900 Sobic007G034200--Sobic006G191200 Sobic003G113300 Sobic003G113300 Sobic007G034200--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic007G034200--Sobic006G170900 Sobic008G123300--Sobic002G239601 Sobic002G112600 Sobic002G112600 Sobic008G123300--Sobic002G112600 Sobic008G123300--Sobic001G200200 Sobic010G279300 Sobic010G279300 Sobic008G123300--Sobic010G279300 Sobic008G123300--Sobic004G356200 Sobic003G135500 Sobic003G135500 Sobic008G123300--Sobic003G135500 Sobic008G151432 Sobic008G151432 Sobic008G123300--Sobic008G151432 Sobic008G123300--Sobic002G137601 Sobic008G123300--Sobic002G386900 Sobic003G259600 Sobic003G259600 Sobic003G360300--Sobic003G259600 Sobic003G360300--Sobic001G123600 Sobic003G360300--Sobic010G269300 Sobic003G360300--Sobic007G047600 Sobic006G179300 Sobic006G179300 Sobic003G360300--Sobic006G179300 Sobic002G142700 Sobic002G142700 Sobic003G360300--Sobic002G142700 Sobic004G342300 Sobic004G342300 Sobic003G360300--Sobic004G342300 Sobic004G277400 Sobic004G277400 Sobic003G360300--Sobic004G277400 Sobic008G080500 Sobic008G080500 Sobic003G360300--Sobic008G080500 Sobic003G299500--Sobic007G034200 Sobic003G299500--Sobic003G194800 Sobic004G106250 Sobic004G106250 Sobic003G299500--Sobic004G106250 Sobic003G299500--Sobic009G120400 Sobic003G016500 Sobic003G016500 Sobic003G299500--Sobic003G016500 Sobic003G299500--Sobic001G123600 Sobic006G245900 Sobic006G245900 Sobic003G299500--Sobic006G245900 Sobic002G235900 Sobic002G235900 Sobic003G299500--Sobic002G235900 Sobic003G299500--Sobic006G191200 Sobic001G200200--Sobic004G356200 Sobic001G200200--Sobic005G031000 Sobic001G200200--Sobic002G386900 Sobic001G200200--Sobic002G371600 Sobic001G200200--Sobic004G030400 Sobic006G181800 Sobic006G181800 Sobic001G200200--Sobic006G181800 Sobic001G200200--Sobic006G191200 Sobic001G200200--Sobic006G029100 Sobic002G125800 Sobic002G125800 Sobic001G200200--Sobic002G125800
Octagon: transcription factors


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