Gene annotation
Transcriptome id Sobic.008G123300.1
Synonym
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt C5YPJ4
Pfam PF05496 PF00498
Panther DB PTHR23074 PTHR23074:SF70
NCBI CDD KOG0737; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G02890 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os11g43970.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ86413 , KQJ86414
Barley HORVU7Hr1G026880.9 , HORVU7Hr1G026880.8 , HORVU7Hr1G026880.1 , HORVU7Hr1G026880.3 , HORVU7Hr1G026880.2 , HORVU7Hr1G026880.5 , HORVU7Hr1G026880.4 , HORVU7Hr1G026880.7 , HORVU7Hr1G026880.6 , HORVU7Hr1G026880.19 , HORVU7Hr1G026880.18 , HORVU7Hr1G026880.15 , HORVU7Hr1G026880.14 , HORVU7Hr1G026880.17 , HORVU7Hr1G026880.16 , HORVU7Hr1G026880.11 , HORVU7Hr1G026880.10 , HORVU7Hr1G026880.13 , HORVU7Hr1G026880.12 , HORVU7Hr1G026880.64 , HORVU7Hr1G026880.65 , HORVU7Hr1G026880.66 , HORVU7Hr1G026880.60 , HORVU7Hr1G026880.61 , HORVU7Hr1G026880.62 , HORVU7Hr1G026880.63 , HORVU7Hr1G026880.59 , HORVU7Hr1G026880.58 , HORVU7Hr1G026880.51 , HORVU7Hr1G026880.50 , HORVU7Hr1G026880.53 , HORVU7Hr1G026880.52 , HORVU7Hr1G026880.55 , HORVU7Hr1G026880.54 , HORVU7Hr1G026880.57 , HORVU7Hr1G026880.56 , HORVU7Hr1G026880.48 , HORVU7Hr1G026880.49 , HORVU7Hr1G026880.46 , HORVU7Hr1G026880.47 , HORVU7Hr1G026880.44 , HORVU7Hr1G026880.45 , HORVU7Hr1G026880.42 , HORVU7Hr1G026880.43 , HORVU7Hr1G026880.40 , HORVU7Hr1G026880.39 , HORVU7Hr1G026880.38 , HORVU7Hr1G026880.33 , HORVU7Hr1G026880.31 , HORVU7Hr1G026880.30 , HORVU7Hr1G026880.37 , HORVU7Hr1G026880.36 , HORVU7Hr1G026880.35 , HORVU7Hr1G026880.28 , HORVU7Hr1G026880.29 , HORVU7Hr1G026880.20 , HORVU7Hr1G026880.21 , HORVU7Hr1G026880.22 , HORVU7Hr1G026880.26 , HORVU7Hr1G026880.27
Wheat TraesCS7B02G028300 , TraesCS7D02G127200 , TraesCS7A02G128400 , TraesCS7A02G128400
Populus PNT27528 , PNT35784


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G239601 - -
2 Sobic.002G112600 zinc finger family protein, putative, expressed -
3 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
4 Sobic.010G279300 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed -
5 Sobic.004G356200 expressed protein -
6 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
7 Sobic.008G151432 - K15208: snRNA-activating protein complex subunit 1
8 Sobic.002G137601 - -
9 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
10 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
11 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
12 Sobic.001G537400 MYB family transcription factor, putative, expressed -
13 Sobic.004G097900 expressed protein -
14 Sobic.001G495400 PPR repeat domain containing protein, putative, expressed -
15 Sobic.007G070000 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
16 Sobic.001G027100 FEN1A - Putative flap endonuclease protein, expressed K04799: FEN1, flap endonuclease-1
17 Sobic.003G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptidase, putative, expressed K01392: thimet oligopeptidase
18 Sobic.003G311600 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
19 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
20 Sobic.001G482200 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3


Gene co-expression network
sample Sobic008G123300 Sobic008G123300 Sobic002G239601 Sobic002G239601 Sobic008G123300--Sobic002G239601 Sobic002G112600 Sobic002G112600 Sobic008G123300--Sobic002G112600 Sobic001G200200 Sobic001G200200 Sobic008G123300--Sobic001G200200 Sobic010G279300 Sobic010G279300 Sobic008G123300--Sobic010G279300 Sobic004G356200 Sobic004G356200 Sobic008G123300--Sobic004G356200 Sobic003G135500 Sobic003G135500 Sobic008G123300--Sobic003G135500 Sobic008G151432 Sobic008G151432 Sobic008G123300--Sobic008G151432 Sobic002G137601 Sobic002G137601 Sobic008G123300--Sobic002G137601 Sobic002G386900 Sobic002G386900 Sobic008G123300--Sobic002G386900 Sobic002G239601--Sobic002G386900 Sobic001G123600 Sobic001G123600 Sobic002G239601--Sobic001G123600 Sobic002G386600 Sobic002G386600 Sobic002G239601--Sobic002G386600 Sobic002G239601--Sobic004G356200 Sobic007G034200 Sobic007G034200 Sobic002G239601--Sobic007G034200 Sobic002G239601--Sobic008G123300 Sobic003G360300 Sobic003G360300 Sobic002G239601--Sobic003G360300 Sobic003G299500 Sobic003G299500 Sobic002G239601--Sobic003G299500 Sobic002G239601--Sobic001G200200 Sobic004G151000 Sobic004G151000 Sobic002G112600--Sobic004G151000 Sobic004G215900 Sobic004G215900 Sobic002G112600--Sobic004G215900 Sobic010G224700 Sobic010G224700 Sobic002G112600--Sobic010G224700 Sobic007G014800 Sobic007G014800 Sobic002G112600--Sobic007G014800 Sobic005G000300 Sobic005G000300 Sobic002G112600--Sobic005G000300 Sobic004G027400 Sobic004G027400 Sobic002G112600--Sobic004G027400 Sobic009G163600 Sobic009G163600 Sobic002G112600--Sobic009G163600 Sobic001G453500 Sobic001G453500 Sobic002G112600--Sobic001G453500 Sobic004G027300 Sobic004G027300 Sobic002G112600--Sobic004G027300 Sobic001G200200--Sobic004G356200 Sobic005G031000 Sobic005G031000 Sobic001G200200--Sobic005G031000 Sobic001G200200--Sobic002G386900 Sobic002G371600 Sobic002G371600 Sobic001G200200--Sobic002G371600 Sobic004G030400 Sobic004G030400 Sobic001G200200--Sobic004G030400 Sobic006G181800 Sobic006G181800 Sobic001G200200--Sobic006G181800 Sobic006G191200 Sobic006G191200 Sobic001G200200--Sobic006G191200 Sobic006G029100 Sobic006G029100 Sobic001G200200--Sobic006G029100 Sobic002G125800 Sobic002G125800 Sobic001G200200--Sobic002G125800 Sobic010G279300--Sobic008G123300 Sobic010G279300--Sobic002G239601 Sobic006G225100 Sobic006G225100 Sobic010G279300--Sobic006G225100 Sobic001G300900 Sobic001G300900 Sobic010G279300--Sobic001G300900 Sobic007G070000 Sobic007G070000 Sobic010G279300--Sobic007G070000 Sobic008G125100 Sobic008G125100 Sobic010G279300--Sobic008G125100 Sobic001G495400 Sobic001G495400 Sobic010G279300--Sobic001G495400 Sobic006G273900 Sobic006G273900 Sobic010G279300--Sobic006G273900 Sobic008G058000 Sobic008G058000 Sobic010G279300--Sobic008G058000 Sobic004G356200--Sobic001G200200 Sobic004G356200--Sobic002G371600 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic004G356200--Sobic002G137601 Sobic002G160700 Sobic002G160700 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G356200--Sobic004G030400 Sobic001G085800 Sobic001G085800 Sobic004G356200--Sobic001G085800 Sobic006G280100 Sobic006G280100 Sobic003G135500--Sobic006G280100 Sobic003G431600 Sobic003G431600 Sobic003G135500--Sobic003G431600 Sobic003G135500--Sobic003G299500 Sobic003G135500--Sobic006G181800 Sobic009G120400 Sobic009G120400 Sobic003G135500--Sobic009G120400 Sobic003G135500--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic003G135500--Sobic008G080500 Sobic008G092800 Sobic008G092800 Sobic003G135500--Sobic008G092800 Sobic002G079100 Sobic002G079100 Sobic003G135500--Sobic002G079100 Sobic008G151432--Sobic008G123300 Sobic008G151432--Sobic001G200200 Sobic010G003900 Sobic010G003900 Sobic008G151432--Sobic010G003900 Sobic008G151432--Sobic002G112600 Sobic003G122800 Sobic003G122800 Sobic008G151432--Sobic003G122800 Sobic008G097600 Sobic008G097600 Sobic008G151432--Sobic008G097600 Sobic003G256800 Sobic003G256800 Sobic008G151432--Sobic003G256800 Sobic004G031300 Sobic004G031300 Sobic008G151432--Sobic004G031300 Sobic001G165801 Sobic001G165801 Sobic008G151432--Sobic001G165801 Sobic002G137601--Sobic004G356200 Sobic002G412700 Sobic002G412700 Sobic002G137601--Sobic002G412700 Sobic006G100800 Sobic006G100800 Sobic002G137601--Sobic006G100800 Sobic002G137601--Sobic007G047600 Sobic010G099800 Sobic010G099800 Sobic002G137601--Sobic010G099800 Sobic003G016500 Sobic003G016500 Sobic002G137601--Sobic003G016500 Sobic001G533100 Sobic001G533100 Sobic002G137601--Sobic001G533100 Sobic003G209400 Sobic003G209400 Sobic002G137601--Sobic003G209400 Sobic002G137601--Sobic001G248100 Sobic002G386900--Sobic002G386600 Sobic004G097900 Sobic004G097900 Sobic002G386900--Sobic004G097900 Sobic002G386900--Sobic001G123600 Sobic002G386900--Sobic006G191200 Sobic002G386900--Sobic007G034200 Sobic001G051400 Sobic001G051400 Sobic002G386900--Sobic001G051400 Sobic002G386900--Sobic001G200200 Sobic002G386900--Sobic002G239601 Sobic002G292800 Sobic002G292800 Sobic002G386900--Sobic002G292800
Octagon: transcription factors


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