Gene annotation
Transcriptome id Sobic.001G027100.2
Synonym Sb01g002580
Functional annotation FEN1A - Putative flap endonuclease protein, expressed
UniProt C5WU23
Pfam PF00752 PF00867
Panther DB PTHR11081 PTHR11081:SF30
NCBI CDD KOG2519; 5'-3' exonuclease
KEGG Orthology K04799; FEN1, flap endonuclease-1
Gene Ontology GO:0006281; DNA repair GO:0004518nuclease activity


Orthologs (automatic annotation)
TAIR AT5G26680 : 5\'-3\' exonuclease family protein
RAP-DB (Rice) LOC_Os05g46270.1 : FEN1A - Putative flap endonuclease protein, expressed
MaizeGDB (Corn) Zm00025a016392
Brachypodium KQK12287
Barley HORVU5Hr1G117650.10 , HORVU5Hr1G117650.12 , HORVU5Hr1G117650.9 , HORVU5Hr1G117650.8 , HORVU5Hr1G117650.1 , HORVU5Hr1G117650.2 , HORVU5Hr1G117650.5 , HORVU5Hr1G117650.4 , HORVU5Hr1G117650.7 , HORVU5Hr1G117650.6 , HORVU5Hr1G117650.13 , HORVU5Hr1G117650.11
Wheat TraesCS4A02G359000 , TraesCS4A02G359000 , TraesCS5D02G514000 , TraesCS5B02G513500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
2 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
3 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
4 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
5 Sobic.002G141900 -(PubMedID : 26976818)@Citrate transporter protein, putative, expressed -
6 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
7 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
9 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
10 Sobic.006G237000 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III
11 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
12 Sobic.006G095800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
14 Sobic.002G111800 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase
15 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
16 Sobic.002G423400 PPR repeat containing protein, expressed -
17 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
18 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
19 Sobic.006G069100 pentatricopeptide, putative, expressed -
20 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21


Gene co-expression network
sample Sobic001G027100 Sobic001G027100 Sobic003G123200 Sobic003G123200 Sobic001G027100--Sobic003G123200 Sobic006G208400 Sobic006G208400 Sobic001G027100--Sobic006G208400 Sobic004G354000 Sobic004G354000 Sobic001G027100--Sobic004G354000 Sobic006G193300 Sobic006G193300 Sobic001G027100--Sobic006G193300 Sobic002G141900 Sobic002G141900 Sobic001G027100--Sobic002G141900 Sobic005G028100 Sobic005G028100 Sobic001G027100--Sobic005G028100 Sobic001G322600 Sobic001G322600 Sobic001G027100--Sobic001G322600 Sobic004G119400 Sobic004G119400 Sobic001G027100--Sobic004G119400 Sobic002G344500 Sobic002G344500 Sobic001G027100--Sobic002G344500 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic008G049100 Sobic008G049100 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic010G224700 Sobic010G224700 Sobic003G123200--Sobic010G224700 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic008G017100 Sobic008G017100 Sobic006G208400--Sobic008G017100 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic001G460500 Sobic001G460500 Sobic006G208400--Sobic001G460500 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic004G354000--Sobic006G208400 Sobic004G342300 Sobic004G342300 Sobic004G354000--Sobic004G342300 Sobic004G354000--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic004G354000--Sobic002G356600 Sobic004G354000--Sobic001G322600 Sobic002G079100 Sobic002G079100 Sobic004G354000--Sobic002G079100 Sobic004G356200 Sobic004G356200 Sobic004G354000--Sobic004G356200 Sobic004G354000--Sobic001G027100 Sobic006G236000 Sobic006G236000 Sobic004G354000--Sobic006G236000 Sobic004G340400 Sobic004G340400 Sobic006G193300--Sobic004G340400 Sobic001G429600 Sobic001G429600 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic006G193300--Sobic008G049100 Sobic006G193300--Sobic009G246500 Sobic006G125900 Sobic006G125900 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic003G199300 Sobic003G199300 Sobic006G193300--Sobic003G199300 Sobic002G272400 Sobic002G272400 Sobic002G141900--Sobic002G272400 Sobic006G281066 Sobic006G281066 Sobic002G141900--Sobic006G281066 Sobic003G267000 Sobic003G267000 Sobic002G141900--Sobic003G267000 Sobic010G027200 Sobic010G027200 Sobic002G141900--Sobic010G027200 Sobic003G165800 Sobic003G165800 Sobic002G141900--Sobic003G165800 Sobic002G141900--Sobic006G208400 Sobic001G104300 Sobic001G104300 Sobic002G141900--Sobic001G104300 Sobic002G140000 Sobic002G140000 Sobic002G141900--Sobic002G140000 Sobic002G141900--Sobic001G027100 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic003G432300 Sobic003G432300 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic010G083900 Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic001G322600--Sobic004G354000 Sobic001G322600--Sobic010G224700 Sobic003G407600 Sobic003G407600 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic002G378100 Sobic002G378100 Sobic001G322600--Sobic002G378100 Sobic004G119400--Sobic008G017100 Sobic004G119400--Sobic010G224700 Sobic006G269800 Sobic006G269800 Sobic004G119400--Sobic006G269800 Sobic007G094500 Sobic007G094500 Sobic004G119400--Sobic007G094500 Sobic002G380100 Sobic002G380100 Sobic004G119400--Sobic002G380100 Sobic004G119400--Sobic001G429600 Sobic002G309200 Sobic002G309200 Sobic004G119400--Sobic002G309200 Sobic003G070100 Sobic003G070100 Sobic004G119400--Sobic003G070100 Sobic001G540800 Sobic001G540800 Sobic004G119400--Sobic001G540800 Sobic003G322200 Sobic003G322200 Sobic002G344500--Sobic003G322200 Sobic002G344500--Sobic001G322600 Sobic008G056900 Sobic008G056900 Sobic002G344500--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic002G344500--Sobic009G096100 Sobic002G344500--Sobic003G407600 Sobic006G226300 Sobic006G226300 Sobic002G344500--Sobic006G226300 Sobic002G344500--Sobic004G036700 Sobic001G422500 Sobic001G422500 Sobic002G344500--Sobic001G422500 Sobic008G152300 Sobic008G152300 Sobic002G344500--Sobic008G152300
Octagon: transcription factors


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