Gene annotation
Transcriptome id Sobic.002G344500.1
Synonym Sb02g036790, PRORP2
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6QF16
Pfam PF13812 PF11977
Panther DB PTHR13547 PTHR13547:SF2
NCBI CDD -
KEGG Orthology K18213; proteinaceous RNase P
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G16650 : proteinaceous RNase P 2
RAP-DB (Rice) LOC_Os01g73690.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a025855
Brachypodium PNT73660
Barley HORVU3Hr1G113360.6 , HORVU3Hr1G113360.5 , HORVU3Hr1G113360.4 , HORVU3Hr1G113360.3 , HORVU3Hr1G113360.2 , HORVU3Hr1G113360.1 , HORVU3Hr1G113360.8 , HORVU3Hr1G113360.7
Wheat TraesCS3A02G518500 , TraesCS3A02G518500 , TraesCS7A02G460400 , TraesCS3B02G585700 , TraesCS3D02G525800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G344500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
2 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
4 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
5 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
6 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
7 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
8 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
9 Sobic.008G152300 expressed protein K15208: snRNA-activating protein complex subunit 1
10 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
11 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
12 Sobic.008G147400 "responsible for fertility restoration, localized in anthers"(PubMedID : 20585750)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
14 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
15 Sobic.008G081600 expressed protein -
16 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
17 Sobic.001G485600 DAG protein, chloroplast precursor, putative, expressed -
18 Sobic.010G091500 pentatricopeptide, putative, expressed -
19 Sobic.003G142700 expressed protein -
20 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)


Gene co-expression network
sample Sobic002G344500 Sobic002G344500 Sobic003G322200 Sobic003G322200 Sobic002G344500--Sobic003G322200 Sobic001G322600 Sobic001G322600 Sobic002G344500--Sobic001G322600 Sobic008G056900 Sobic008G056900 Sobic002G344500--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic002G344500--Sobic009G096100 Sobic003G407600 Sobic003G407600 Sobic002G344500--Sobic003G407600 Sobic006G226300 Sobic006G226300 Sobic002G344500--Sobic006G226300 Sobic004G036700 Sobic004G036700 Sobic002G344500--Sobic004G036700 Sobic001G422500 Sobic001G422500 Sobic002G344500--Sobic001G422500 Sobic008G152300 Sobic008G152300 Sobic002G344500--Sobic008G152300 Sobic001G372800 Sobic001G372800 Sobic003G322200--Sobic001G372800 Sobic001G401400 Sobic001G401400 Sobic003G322200--Sobic001G401400 Sobic003G123200 Sobic003G123200 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic010G038800 Sobic010G038800 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G336500 Sobic003G336500 Sobic003G322200--Sobic003G336500 Sobic003G322200--Sobic002G344500 Sobic001G483800 Sobic001G483800 Sobic003G322200--Sobic001G483800 Sobic010G083900 Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic010G224700 Sobic010G224700 Sobic001G322600--Sobic010G224700 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic002G378100 Sobic002G378100 Sobic001G322600--Sobic002G378100 Sobic008G056900--Sobic009G096100 Sobic001G485600 Sobic001G485600 Sobic008G056900--Sobic001G485600 Sobic008G081600 Sobic008G081600 Sobic008G056900--Sobic008G081600 Sobic007G000400 Sobic007G000400 Sobic008G056900--Sobic007G000400 Sobic008G056900--Sobic002G344500 Sobic007G197400 Sobic007G197400 Sobic008G056900--Sobic007G197400 Sobic004G227100 Sobic004G227100 Sobic008G056900--Sobic004G227100 Sobic007G077700 Sobic007G077700 Sobic008G056900--Sobic007G077700 Sobic001G087100 Sobic001G087100 Sobic008G056900--Sobic001G087100 Sobic009G096100--Sobic008G056900 Sobic002G192500 Sobic002G192500 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic009G096100--Sobic001G485600 Sobic006G056000 Sobic006G056000 Sobic009G096100--Sobic006G056000 Sobic007G043900 Sobic007G043900 Sobic009G096100--Sobic007G043900 Sobic009G096100--Sobic002G344500 Sobic002G380100 Sobic002G380100 Sobic009G096100--Sobic002G380100 Sobic009G096100--Sobic007G077700 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic003G407600--Sobic001G322600 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic001G346900 Sobic001G346900 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic003G042400 Sobic003G042400 Sobic006G226300--Sobic003G042400 Sobic004G285000 Sobic004G285000 Sobic006G226300--Sobic004G285000 Sobic008G147200 Sobic008G147200 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic003G258900 Sobic003G258900 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500 Sobic005G028100 Sobic005G028100 Sobic004G036700--Sobic005G028100 Sobic004G036700--Sobic001G401400 Sobic004G036700--Sobic001G422500 Sobic006G225400 Sobic006G225400 Sobic004G036700--Sobic006G225400 Sobic008G163500 Sobic008G163500 Sobic004G036700--Sobic008G163500 Sobic004G036700--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic004G036700--Sobic003G425100 Sobic004G036700--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic004G036700--Sobic010G205900 Sobic001G422500--Sobic004G036700 Sobic001G422500--Sobic008G163500 Sobic001G422500--Sobic002G378100 Sobic006G231800 Sobic006G231800 Sobic001G422500--Sobic006G231800 Sobic001G422500--Sobic010G083900 Sobic002G262100 Sobic002G262100 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic001G422500--Sobic006G198600 Sobic001G422500--Sobic003G123200 Sobic010G091500 Sobic010G091500 Sobic008G152300--Sobic010G091500 Sobic008G152300--Sobic002G344500 Sobic008G152300--Sobic002G380100 Sobic001G334100 Sobic001G334100 Sobic008G152300--Sobic001G334100 Sobic004G149800 Sobic004G149800 Sobic008G152300--Sobic004G149800 Sobic003G067201 Sobic003G067201 Sobic008G152300--Sobic003G067201 Sobic008G152300--Sobic002G142600 Sobic006G028700 Sobic006G028700 Sobic008G152300--Sobic006G028700 Sobic006G069100 Sobic006G069100 Sobic008G152300--Sobic006G069100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.