Gene annotation
Transcriptome id Sobic.001G485600.1
Synonym Sb01g045460
Functional annotation DAG protein, chloroplast precursor, putative, expressed
UniProt C5WVV4
Pfam -
Panther DB PTHR31346 PTHR31346:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15000 : cobalt ion binding
RAP-DB (Rice) LOC_Os09g04670.1 : DAG protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a053308
Brachypodium KQJ99153
Barley HORVU5Hr1G077020.3 , HORVU5Hr1G077020.2 , HORVU5Hr1G077020.1 , HORVU7Hr1G054850.3 , HORVU7Hr1G054850.2
Wheat TraesCS7D02G263300 , TraesCS5B02G289900 , TraesCS5B02G289900 , TraesCS5D02G298300 , TraesCS5D02G298300 , TraesCS7B02G160200 , TraesCS5A02G291000 , TraesCS5B02G290000 , TraesCS7B02G160200 , TraesCS7A02G262500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
2 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
3 Sobic.003G324100 haloacid dehalogenase, putative, expressed K01094: phosphatidylglycerophosphatase GEP4
4 Sobic.003G245900 membrane associated DUF588 domain containing protein, putative, expressed -
5 Sobic.001G362300 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
6 Sobic.008G081600 expressed protein -
7 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
8 Sobic.003G174800 - -
9 Sobic.007G197400 pentatricopeptide, putative, expressed -
10 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
11 Sobic.002G192500 ES43 protein, putative, expressed -
12 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G087100 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome C, putative, expressed -
14 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
15 Sobic.002G146400 - -
16 Sobic.003G138600 expressed protein -
17 Sobic.003G368800 expressed protein -
18 Sobic.009G227900 expressed protein K10581: ubiquitin-conjugating enzyme E2 O
19 Sobic.006G214400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
20 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein


Gene co-expression network
sample Sobic001G485600 Sobic001G485600 Sobic008G056900 Sobic008G056900 Sobic001G485600--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic001G485600--Sobic009G096100 Sobic003G324100 Sobic003G324100 Sobic001G485600--Sobic003G324100 Sobic003G245900 Sobic003G245900 Sobic001G485600--Sobic003G245900 Sobic001G362300 Sobic001G362300 Sobic001G485600--Sobic001G362300 Sobic008G081600 Sobic008G081600 Sobic001G485600--Sobic008G081600 Sobic005G100900 Sobic005G100900 Sobic001G485600--Sobic005G100900 Sobic003G174800 Sobic003G174800 Sobic001G485600--Sobic003G174800 Sobic007G197400 Sobic007G197400 Sobic001G485600--Sobic007G197400 Sobic008G056900--Sobic009G096100 Sobic008G056900--Sobic001G485600 Sobic008G056900--Sobic008G081600 Sobic007G000400 Sobic007G000400 Sobic008G056900--Sobic007G000400 Sobic002G344500 Sobic002G344500 Sobic008G056900--Sobic002G344500 Sobic008G056900--Sobic007G197400 Sobic004G227100 Sobic004G227100 Sobic008G056900--Sobic004G227100 Sobic007G077700 Sobic007G077700 Sobic008G056900--Sobic007G077700 Sobic001G087100 Sobic001G087100 Sobic008G056900--Sobic001G087100 Sobic009G096100--Sobic008G056900 Sobic002G192500 Sobic002G192500 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic009G096100--Sobic001G485600 Sobic006G056000 Sobic006G056000 Sobic009G096100--Sobic006G056000 Sobic007G043900 Sobic007G043900 Sobic009G096100--Sobic007G043900 Sobic009G096100--Sobic002G344500 Sobic002G380100 Sobic002G380100 Sobic009G096100--Sobic002G380100 Sobic009G096100--Sobic007G077700 Sobic003G324100--Sobic001G485600 Sobic009G103600 Sobic009G103600 Sobic003G324100--Sobic009G103600 Sobic002G146400 Sobic002G146400 Sobic003G324100--Sobic002G146400 Sobic001G114400 Sobic001G114400 Sobic003G324100--Sobic001G114400 Sobic001G429300 Sobic001G429300 Sobic003G324100--Sobic001G429300 Sobic002G191100 Sobic002G191100 Sobic003G324100--Sobic002G191100 Sobic003G324100--Sobic003G245900 Sobic001G069600 Sobic001G069600 Sobic003G324100--Sobic001G069600 Sobic004G087600 Sobic004G087600 Sobic003G324100--Sobic004G087600 Sobic003G245900--Sobic001G485600 Sobic003G245900--Sobic001G429300 Sobic003G245900--Sobic003G324100 Sobic009G112400 Sobic009G112400 Sobic003G245900--Sobic009G112400 Sobic010G268300 Sobic010G268300 Sobic003G245900--Sobic010G268300 Sobic002G122600 Sobic002G122600 Sobic003G245900--Sobic002G122600 Sobic008G068601 Sobic008G068601 Sobic003G245900--Sobic008G068601 Sobic003G245900--Sobic003G174800 Sobic006G038400 Sobic006G038400 Sobic003G245900--Sobic006G038400 Sobic006G272200 Sobic006G272200 Sobic001G362300--Sobic006G272200 Sobic001G362300--Sobic001G485600 Sobic001G362300--Sobic004G087600 Sobic002G238000 Sobic002G238000 Sobic001G362300--Sobic002G238000 Sobic008G165900 Sobic008G165900 Sobic001G362300--Sobic008G165900 Sobic001G362300--Sobic005G100900 Sobic003G123000 Sobic003G123000 Sobic001G362300--Sobic003G123000 Sobic002G399200 Sobic002G399200 Sobic001G362300--Sobic002G399200 Sobic001G362300--Sobic002G146400 Sobic008G081600--Sobic008G056900 Sobic006G078600 Sobic006G078600 Sobic008G081600--Sobic006G078600 Sobic002G336800 Sobic002G336800 Sobic008G081600--Sobic002G336800 Sobic008G081600--Sobic001G087100 Sobic008G081600--Sobic001G485600 Sobic002G378100 Sobic002G378100 Sobic008G081600--Sobic002G378100 Sobic008G081600--Sobic009G096100 Sobic008G081600--Sobic002G344500 Sobic002G298100 Sobic002G298100 Sobic008G081600--Sobic002G298100 Sobic005G100900--Sobic002G238000 Sobic009G071700 Sobic009G071700 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic003G425100 Sobic003G425100 Sobic005G100900--Sobic003G425100 Sobic001G119600 Sobic001G119600 Sobic005G100900--Sobic001G119600 Sobic002G262100 Sobic002G262100 Sobic005G100900--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic005G100900--Sobic004G173100 Sobic005G100900--Sobic001G485600 Sobic005G100900--Sobic008G165900 Sobic008G000900 Sobic008G000900 Sobic003G174800--Sobic008G000900 Sobic003G174800--Sobic001G087100 Sobic006G214400 Sobic006G214400 Sobic003G174800--Sobic006G214400 Sobic010G143200 Sobic010G143200 Sobic003G174800--Sobic010G143200 Sobic003G174800--Sobic007G043900 Sobic004G175600 Sobic004G175600 Sobic003G174800--Sobic004G175600 Sobic003G174800--Sobic001G485600 Sobic001G043400 Sobic001G043400 Sobic003G174800--Sobic001G043400 Sobic003G174800--Sobic010G268300 Sobic003G085600 Sobic003G085600 Sobic007G197400--Sobic003G085600 Sobic007G197400--Sobic008G056900 Sobic002G408600 Sobic002G408600 Sobic007G197400--Sobic002G408600 Sobic007G197400--Sobic001G485600 Sobic008G098600 Sobic008G098600 Sobic007G197400--Sobic008G098600 Sobic006G180700 Sobic006G180700 Sobic007G197400--Sobic006G180700 Sobic010G278600 Sobic010G278600 Sobic007G197400--Sobic010G278600 Sobic009G093400 Sobic009G093400 Sobic007G197400--Sobic009G093400 Sobic004G089500 Sobic004G089500 Sobic007G197400--Sobic004G089500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.