Gene annotation
Transcriptome id Sobic.001G362300.2,Sobic.001G362300.1
Synonym sb-SCL28, SCL28, Sb01g034590, serine/arginine-rich (SR) family
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, putative, expressed
UniProt M1HJ27 , C5WYS2 , M1HAI2 , M1H9B4
Pfam PF00076
Panther DB PTHR23147 PTHR23147:SF7
NCBI CDD KOG0114; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology K12900; FUS-interacting serine-arginine-rich protein 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G18810 : SC35-like splicing factor 28
RAP-DB (Rice) LOC_Os03g24890.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002596
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
2 Sobic.001G485600 DAG protein, chloroplast precursor, putative, expressed -
3 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
4 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
5 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
6 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
7 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
8 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
9 Sobic.002G146400 - -
10 Sobic.007G145100 SGT1 protein, putative, expressed -
11 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
12 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
13 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
14 Sobic.001G222900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
15 Sobic.003G324100 haloacid dehalogenase, putative, expressed K01094: phosphatidylglycerophosphatase GEP4
16 Sobic.004G033600 expressed protein -
17 Sobic.006G263000 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
18 Sobic.001G144600 parafibromin, putative, expressed K15175: parafibromin
19 Sobic.002G179100 AGAP009532-PA, putative, expressed -
20 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4


Gene co-expression network
sample Sobic001G362300 Sobic001G362300 Sobic006G272200 Sobic006G272200 Sobic001G362300--Sobic006G272200 Sobic001G485600 Sobic001G485600 Sobic001G362300--Sobic001G485600 Sobic004G087600 Sobic004G087600 Sobic001G362300--Sobic004G087600 Sobic002G238000 Sobic002G238000 Sobic001G362300--Sobic002G238000 Sobic008G165900 Sobic008G165900 Sobic001G362300--Sobic008G165900 Sobic005G100900 Sobic005G100900 Sobic001G362300--Sobic005G100900 Sobic003G123000 Sobic003G123000 Sobic001G362300--Sobic003G123000 Sobic002G399200 Sobic002G399200 Sobic001G362300--Sobic002G399200 Sobic002G146400 Sobic002G146400 Sobic001G362300--Sobic002G146400 Sobic010G085200 Sobic010G085200 Sobic006G272200--Sobic010G085200 Sobic003G119400 Sobic003G119400 Sobic006G272200--Sobic003G119400 Sobic006G272200--Sobic001G362300 Sobic002G394800 Sobic002G394800 Sobic006G272200--Sobic002G394800 Sobic009G007700 Sobic009G007700 Sobic006G272200--Sobic009G007700 Sobic004G074300 Sobic004G074300 Sobic006G272200--Sobic004G074300 Sobic001G370300 Sobic001G370300 Sobic006G272200--Sobic001G370300 Sobic006G233000 Sobic006G233000 Sobic006G272200--Sobic006G233000 Sobic008G009600 Sobic008G009600 Sobic006G272200--Sobic008G009600 Sobic008G056900 Sobic008G056900 Sobic001G485600--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic001G485600--Sobic009G096100 Sobic003G324100 Sobic003G324100 Sobic001G485600--Sobic003G324100 Sobic003G245900 Sobic003G245900 Sobic001G485600--Sobic003G245900 Sobic001G485600--Sobic001G362300 Sobic008G081600 Sobic008G081600 Sobic001G485600--Sobic008G081600 Sobic001G485600--Sobic005G100900 Sobic003G174800 Sobic003G174800 Sobic001G485600--Sobic003G174800 Sobic007G197400 Sobic007G197400 Sobic001G485600--Sobic007G197400 Sobic008G011100 Sobic008G011100 Sobic004G087600--Sobic008G011100 Sobic004G018300 Sobic004G018300 Sobic004G087600--Sobic004G018300 Sobic005G106500 Sobic005G106500 Sobic004G087600--Sobic005G106500 Sobic002G031400 Sobic002G031400 Sobic004G087600--Sobic002G031400 Sobic002G309800 Sobic002G309800 Sobic004G087600--Sobic002G309800 Sobic003G133900 Sobic003G133900 Sobic004G087600--Sobic003G133900 Sobic001G281600 Sobic001G281600 Sobic004G087600--Sobic001G281600 Sobic001G124000 Sobic001G124000 Sobic004G087600--Sobic001G124000 Sobic001G360900 Sobic001G360900 Sobic004G087600--Sobic001G360900 Sobic002G238000--Sobic005G100900 Sobic002G238000--Sobic008G165900 Sobic009G071700 Sobic009G071700 Sobic002G238000--Sobic009G071700 Sobic006G125900 Sobic006G125900 Sobic002G238000--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G238000--Sobic002G262100 Sobic010G228700 Sobic010G228700 Sobic002G238000--Sobic010G228700 Sobic001G224200 Sobic001G224200 Sobic002G238000--Sobic001G224200 Sobic002G092050 Sobic002G092050 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100 Sobic008G165900--Sobic001G224200 Sobic003G332900 Sobic003G332900 Sobic008G165900--Sobic003G332900 Sobic008G165900--Sobic002G238000 Sobic006G128400 Sobic006G128400 Sobic008G165900--Sobic006G128400 Sobic007G075800 Sobic007G075800 Sobic008G165900--Sobic007G075800 Sobic001G207200 Sobic001G207200 Sobic008G165900--Sobic001G207200 Sobic010G100800 Sobic010G100800 Sobic008G165900--Sobic010G100800 Sobic001G501300 Sobic001G501300 Sobic008G165900--Sobic001G501300 Sobic002G031700 Sobic002G031700 Sobic008G165900--Sobic002G031700 Sobic005G100900--Sobic002G238000 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic003G425100 Sobic003G425100 Sobic005G100900--Sobic003G425100 Sobic001G119600 Sobic001G119600 Sobic005G100900--Sobic001G119600 Sobic005G100900--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic005G100900--Sobic004G173100 Sobic005G100900--Sobic001G485600 Sobic005G100900--Sobic008G165900 Sobic003G122500 Sobic003G122500 Sobic003G123000--Sobic003G122500 Sobic004G095300 Sobic004G095300 Sobic003G123000--Sobic004G095300 Sobic001G222900 Sobic001G222900 Sobic003G123000--Sobic001G222900 Sobic010G171100 Sobic010G171100 Sobic003G123000--Sobic010G171100 Sobic002G280600 Sobic002G280600 Sobic003G123000--Sobic002G280600 Sobic004G246700 Sobic004G246700 Sobic003G123000--Sobic004G246700 Sobic001G218800 Sobic001G218800 Sobic003G123000--Sobic001G218800 Sobic008G165700 Sobic008G165700 Sobic003G123000--Sobic008G165700 Sobic001G473600 Sobic001G473600 Sobic003G123000--Sobic001G473600 Sobic002G399200--Sobic002G262100 Sobic008G163500 Sobic008G163500 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic002G399200--Sobic004G173100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic006G226300 Sobic006G226300 Sobic002G399200--Sobic006G226300 Sobic009G163600 Sobic009G163600 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500 Sobic002G146400--Sobic003G324100 Sobic001G422500 Sobic001G422500 Sobic002G146400--Sobic001G422500 Sobic002G146400--Sobic003G332900 Sobic002G146400--Sobic001G362300 Sobic002G146400--Sobic005G100900 Sobic002G146400--Sobic001G485600 Sobic002G146400--Sobic002G262100 Sobic002G146400--Sobic008G165900 Sobic001G322600 Sobic001G322600 Sobic002G146400--Sobic001G322600
Octagon: transcription factors


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