Gene annotation
Transcriptome id Sobic.002G179100.1
Synonym
Functional annotation AGAP009532-PA, putative, expressed
UniProt A0A1B6QC28
Pfam PF10294
Panther DB PTHR14614 PTHR14614:SF39
NCBI CDD KOG2920; Predicted methyltransferase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14000 : Putative methyltransferase family protein
RAP-DB (Rice) LOC_Os09g19570.1 : AGAP009532-PA, putative, expressed
MaizeGDB (Corn) Zm00025a013802
Brachypodium KQJ89938 , KQJ89937
Barley HORVU5Hr1G056820.10 , HORVU5Hr1G056820.11 , HORVU5Hr1G056820.8 , HORVU5Hr1G056820.9 , HORVU5Hr1G056820.6 , HORVU5Hr1G056820.7 , HORVU5Hr1G056820.4 , HORVU5Hr1G056820.2 , HORVU5Hr1G056820.1
Wheat TraesCS5A02G195900 , TraesCS5A02G195900 , TraesCS5B02G187500 , TraesCS5D02G195100
Populus -


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cDNA sequences
Sobic.002G179100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
2 Sobic.004G033600 expressed protein -
3 Sobic.010G176500 expressed protein -
4 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
5 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
6 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
7 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
8 Sobic.001G544500 expressed protein -
9 Sobic.002G014600 OsFBX285 - F-box domain containing protein, expressed -
10 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
11 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
12 Sobic.010G000300 transmembrane BAX inhibitor motif-containing protein, putative, expressed -
13 Sobic.001G362300 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
14 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
15 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
16 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.002G009200 - K15456: protein KTI12
18 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
19 Sobic.004G250300 eukaryotic aspartyl protease domain containing protein, expressed -
20 Sobic.001G218800 expressed protein -


Gene co-expression network
sample Sobic002G179100 Sobic002G179100 Sobic007G039400 Sobic007G039400 Sobic002G179100--Sobic007G039400 Sobic004G033600 Sobic004G033600 Sobic002G179100--Sobic004G033600 Sobic010G176500 Sobic010G176500 Sobic002G179100--Sobic010G176500 Sobic001G003500 Sobic001G003500 Sobic002G179100--Sobic001G003500 Sobic006G125900 Sobic006G125900 Sobic002G179100--Sobic006G125900 Sobic009G138700 Sobic009G138700 Sobic002G179100--Sobic009G138700 Sobic002G238000 Sobic002G238000 Sobic002G179100--Sobic002G238000 Sobic001G544500 Sobic001G544500 Sobic002G179100--Sobic001G544500 Sobic002G014600 Sobic002G014600 Sobic002G179100--Sobic002G014600 Sobic001G291800 Sobic001G291800 Sobic007G039400--Sobic001G291800 Sobic007G039400--Sobic009G138700 Sobic001G259000 Sobic001G259000 Sobic007G039400--Sobic001G259000 Sobic001G145400 Sobic001G145400 Sobic007G039400--Sobic001G145400 Sobic004G340400 Sobic004G340400 Sobic007G039400--Sobic004G340400 Sobic010G007100 Sobic010G007100 Sobic007G039400--Sobic010G007100 Sobic004G353000 Sobic004G353000 Sobic007G039400--Sobic004G353000 Sobic007G039400--Sobic010G176500 Sobic007G039400--Sobic004G033600 Sobic004G033600--Sobic007G039400 Sobic001G493200 Sobic001G493200 Sobic004G033600--Sobic001G493200 Sobic001G081000 Sobic001G081000 Sobic004G033600--Sobic001G081000 Sobic006G199200 Sobic006G199200 Sobic004G033600--Sobic006G199200 Sobic001G008200 Sobic001G008200 Sobic004G033600--Sobic001G008200 Sobic002G425700 Sobic002G425700 Sobic004G033600--Sobic002G425700 Sobic009G056200 Sobic009G056200 Sobic004G033600--Sobic009G056200 Sobic010G079900 Sobic010G079900 Sobic004G033600--Sobic010G079900 Sobic001G000200 Sobic001G000200 Sobic004G033600--Sobic001G000200 Sobic001G218800 Sobic001G218800 Sobic010G176500--Sobic001G218800 Sobic010G176500--Sobic007G039400 Sobic010G176500--Sobic001G291800 Sobic002G092300 Sobic002G092300 Sobic010G176500--Sobic002G092300 Sobic002G256200 Sobic002G256200 Sobic010G176500--Sobic002G256200 Sobic008G103300 Sobic008G103300 Sobic010G176500--Sobic008G103300 Sobic001G482900 Sobic001G482900 Sobic010G176500--Sobic001G482900 Sobic003G099300 Sobic003G099300 Sobic010G176500--Sobic003G099300 Sobic006G233300 Sobic006G233300 Sobic010G176500--Sobic006G233300 Sobic004G321700 Sobic004G321700 Sobic001G003500--Sobic004G321700 Sobic008G147200 Sobic008G147200 Sobic001G003500--Sobic008G147200 Sobic002G052700 Sobic002G052700 Sobic001G003500--Sobic002G052700 Sobic001G003500--Sobic001G291800 Sobic005G220000 Sobic005G220000 Sobic001G003500--Sobic005G220000 Sobic001G003500--Sobic010G007100 Sobic004G357400 Sobic004G357400 Sobic001G003500--Sobic004G357400 Sobic004G095300 Sobic004G095300 Sobic001G003500--Sobic004G095300 Sobic001G003500--Sobic006G125900 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic009G138700--Sobic007G039400 Sobic008G160000 Sobic008G160000 Sobic009G138700--Sobic008G160000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic006G135900 Sobic006G135900 Sobic009G138700--Sobic006G135900 Sobic009G143800 Sobic009G143800 Sobic009G138700--Sobic009G143800 Sobic005G100900 Sobic005G100900 Sobic002G238000--Sobic005G100900 Sobic008G165900 Sobic008G165900 Sobic002G238000--Sobic008G165900 Sobic009G071700 Sobic009G071700 Sobic002G238000--Sobic009G071700 Sobic002G238000--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G238000--Sobic002G262100 Sobic010G228700 Sobic010G228700 Sobic002G238000--Sobic010G228700 Sobic001G224200 Sobic001G224200 Sobic002G238000--Sobic001G224200 Sobic002G092050 Sobic002G092050 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100 Sobic001G544500--Sobic010G228700 Sobic003G285000 Sobic003G285000 Sobic001G544500--Sobic003G285000 Sobic002G040800 Sobic002G040800 Sobic001G544500--Sobic002G040800 Sobic001G544500--Sobic008G051200 Sobic001G222250 Sobic001G222250 Sobic001G544500--Sobic001G222250 Sobic009G105200 Sobic009G105200 Sobic001G544500--Sobic009G105200 Sobic001G544500--Sobic001G453400 Sobic001G544500--Sobic004G321700 Sobic001G544500--Sobic001G003500 Sobic004G186000 Sobic004G186000 Sobic002G014600--Sobic004G186000 Sobic002G280600 Sobic002G280600 Sobic002G014600--Sobic002G280600 Sobic008G127400 Sobic008G127400 Sobic002G014600--Sobic008G127400 Sobic006G272200 Sobic006G272200 Sobic002G014600--Sobic006G272200 Sobic002G394800 Sobic002G394800 Sobic002G014600--Sobic002G394800 Sobic003G439800 Sobic003G439800 Sobic002G014600--Sobic003G439800 Sobic010G232900 Sobic010G232900 Sobic002G014600--Sobic010G232900 Sobic010G037400 Sobic010G037400 Sobic002G014600--Sobic010G037400 Sobic006G067900 Sobic006G067900 Sobic002G014600--Sobic006G067900
Octagon: transcription factors


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