Gene annotation
Transcriptome id Sobic.004G250300.1
Synonym Sb04g028990
Functional annotation eukaryotic aspartyl protease domain containing protein, expressed
UniProt C5XZC9
Pfam PF14543
Panther DB PTHR13683 PTHR13683:SF334
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G49050 : Eukaryotic aspartyl protease family protein
RAP-DB (Rice) LOC_Os02g49800.1 : eukaryotic aspartyl protease domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032641
Brachypodium KQK01610
Barley HORVU6Hr1G072910.7 , HORVU6Hr1G072910.6 , HORVU6Hr1G072910.5 , HORVU6Hr1G072910.4 , HORVU6Hr1G072910.3 , HORVU6Hr1G072910.2 , HORVU6Hr1G072910.1 , HORVU6Hr1G072910.9 , HORVU6Hr1G072910.8 , HORVU6Hr1G072910.10
Wheat TraesCS6B02G321200 , TraesCS6D02G272600 , TraesCS6A02G291200
Populus -


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cDNA sequences
Sobic.004G250300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
3 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
4 Sobic.002G180000 protein kinase domain containing protein, expressed -
5 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
6 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
7 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
8 Sobic.010G090900 membrane-anchored ubiquitin-fold protein, putative, expressed -
9 Sobic.002G187801 - K03134: transcription initiation factor TFIID subunit 10
10 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
11 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
12 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
13 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
14 Sobic.004G156400 LSM domain containing protein, expressed K12621: U6 snRNA-associated Sm-like protein LSm2
15 Sobic.001G080000 expressed protein -
16 Sobic.008G165700 expressed protein -
17 Sobic.008G092300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.008G080200 leucine-rich repeat family protein, putative, expressed -
19 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
20 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -


Gene co-expression network
sample Sobic004G250300 Sobic004G250300 Sobic002G092300 Sobic002G092300 Sobic004G250300--Sobic002G092300 Sobic003G405700 Sobic003G405700 Sobic004G250300--Sobic003G405700 Sobic003G250500 Sobic003G250500 Sobic004G250300--Sobic003G250500 Sobic002G180000 Sobic002G180000 Sobic004G250300--Sobic002G180000 Sobic004G301900 Sobic004G301900 Sobic004G250300--Sobic004G301900 Sobic002G259400 Sobic002G259400 Sobic004G250300--Sobic002G259400 Sobic009G033900 Sobic009G033900 Sobic004G250300--Sobic009G033900 Sobic010G090900 Sobic010G090900 Sobic004G250300--Sobic010G090900 Sobic002G187801 Sobic002G187801 Sobic004G250300--Sobic002G187801 Sobic010G279700 Sobic010G279700 Sobic002G092300--Sobic010G279700 Sobic002G092300--Sobic004G250300 Sobic004G021200 Sobic004G021200 Sobic002G092300--Sobic004G021200 Sobic007G115200 Sobic007G115200 Sobic002G092300--Sobic007G115200 Sobic008G092300 Sobic008G092300 Sobic002G092300--Sobic008G092300 Sobic001G281600 Sobic001G281600 Sobic002G092300--Sobic001G281600 Sobic001G000200 Sobic001G000200 Sobic002G092300--Sobic001G000200 Sobic002G092300--Sobic003G250500 Sobic001G016000 Sobic001G016000 Sobic002G092300--Sobic001G016000 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic001G080000 Sobic001G080000 Sobic003G405700--Sobic001G080000 Sobic006G183000 Sobic006G183000 Sobic003G405700--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic003G405700--Sobic002G129000 Sobic010G105600 Sobic010G105600 Sobic003G405700--Sobic010G105600 Sobic009G050700 Sobic009G050700 Sobic003G405700--Sobic009G050700 Sobic001G136900 Sobic001G136900 Sobic003G405700--Sobic001G136900 Sobic004G059000 Sobic004G059000 Sobic003G405700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic003G405700--Sobic002G272600 Sobic003G250500--Sobic004G059000 Sobic003G250500--Sobic004G305600 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic007G111100 Sobic007G111100 Sobic002G180000--Sobic007G111100 Sobic001G143500 Sobic001G143500 Sobic002G180000--Sobic001G143500 Sobic008G139700 Sobic008G139700 Sobic002G180000--Sobic008G139700 Sobic006G065800 Sobic006G065800 Sobic002G180000--Sobic006G065800 Sobic006G267300 Sobic006G267300 Sobic002G180000--Sobic006G267300 Sobic001G131800 Sobic001G131800 Sobic002G180000--Sobic001G131800 Sobic002G180000--Sobic002G272600 Sobic002G180000--Sobic001G080000 Sobic002G180000--Sobic003G405700 Sobic004G301900--Sobic010G090900 Sobic004G301900--Sobic003G250500 Sobic002G113900 Sobic002G113900 Sobic004G301900--Sobic002G113900 Sobic004G301900--Sobic004G059000 Sobic004G301900--Sobic004G253000 Sobic004G301900--Sobic001G512600 Sobic007G019800 Sobic007G019800 Sobic004G301900--Sobic007G019800 Sobic001G051200 Sobic001G051200 Sobic004G301900--Sobic001G051200 Sobic004G356900 Sobic004G356900 Sobic004G301900--Sobic004G356900 Sobic003G119400 Sobic003G119400 Sobic002G259400--Sobic003G119400 Sobic004G074300 Sobic004G074300 Sobic002G259400--Sobic004G074300 Sobic001G041200 Sobic001G041200 Sobic002G259400--Sobic001G041200 Sobic002G268400 Sobic002G268400 Sobic002G259400--Sobic002G268400 Sobic002G259400--Sobic009G033900 Sobic010G269100 Sobic010G269100 Sobic002G259400--Sobic010G269100 Sobic006G281500 Sobic006G281500 Sobic002G259400--Sobic006G281500 Sobic001G263000 Sobic001G263000 Sobic002G259400--Sobic001G263000 Sobic010G085200 Sobic010G085200 Sobic002G259400--Sobic010G085200 Sobic009G033900--Sobic006G183000 Sobic009G033900--Sobic002G268400 Sobic001G249700 Sobic001G249700 Sobic009G033900--Sobic001G249700 Sobic009G033900--Sobic004G074300 Sobic009G033900--Sobic001G263000 Sobic001G152000 Sobic001G152000 Sobic009G033900--Sobic001G152000 Sobic004G057800 Sobic004G057800 Sobic009G033900--Sobic004G057800 Sobic009G033900--Sobic010G269100 Sobic006G252100 Sobic006G252100 Sobic009G033900--Sobic006G252100 Sobic010G090900--Sobic004G301900 Sobic010G090900--Sobic001G051200 Sobic001G098200 Sobic001G098200 Sobic010G090900--Sobic001G098200 Sobic001G123000 Sobic001G123000 Sobic010G090900--Sobic001G123000 Sobic006G119800 Sobic006G119800 Sobic010G090900--Sobic006G119800 Sobic004G119100 Sobic004G119100 Sobic010G090900--Sobic004G119100 Sobic010G090900--Sobic003G250500 Sobic010G090900--Sobic001G263000 Sobic010G090900--Sobic002G092300 Sobic008G165700 Sobic008G165700 Sobic002G187801--Sobic008G165700 Sobic001G253700 Sobic001G253700 Sobic002G187801--Sobic001G253700 Sobic009G233300 Sobic009G233300 Sobic002G187801--Sobic009G233300 Sobic006G273200 Sobic006G273200 Sobic002G187801--Sobic006G273200 Sobic001G284800 Sobic001G284800 Sobic002G187801--Sobic001G284800 Sobic004G003501 Sobic004G003501 Sobic002G187801--Sobic004G003501 Sobic003G000150 Sobic003G000150 Sobic002G187801--Sobic003G000150 Sobic002G187801--Sobic002G092300 Sobic002G365100 Sobic002G365100 Sobic002G187801--Sobic002G365100
Octagon: transcription factors


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