Gene annotation
Transcriptome id Sobic.002G259400.1
Synonym Sb02g029440
Functional annotation zinc finger DHHC domain-containing protein, putative, expressed
UniProt C5X598
Pfam PF01529
Panther DB PTHR22883 PTHR22883:SF58
NCBI CDD KOG1311; DHHC-type Zn-finger proteins
KEGG Orthology K16675; palmitoyltransferase ZDHHC9/14/18
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G26935 : DHHC-type zinc finger family protein
RAP-DB (Rice) LOC_Os09g33450.1 : zinc finger DHHC domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a047593 , Zm00025a014314 , Zm00025a005294
Brachypodium KQJ99152 , KQJ90946
Barley HORVU3Hr1G095750.9 , HORVU3Hr1G095750.8 , HORVU3Hr1G095750.7 , HORVU3Hr1G095750.6 , HORVU3Hr1G095750.4 , HORVU3Hr1G095750.3 , HORVU3Hr1G095750.2 , HORVU5Hr1G076780.1 , HORVU5Hr1G076780.3 , HORVU5Hr1G076780.2 , HORVU5Hr1G076780.5 , HORVU5Hr1G076780.4 , HORVU5Hr1G076780.7 , HORVU5Hr1G076780.6 , HORVU5Hr1G076780.9 , HORVU5Hr1G076780.8 , HORVU5Hr1G076780.11 , HORVU5Hr1G076780.10 , HORVU5Hr1G076780.12
Wheat TraesCS7D02G263200 , TraesCS7D02G263200 , TraesCS7B02G160100 , TraesCS5B02G288700 , TraesCS5A02G289300 , TraesCS7A02G261000 , TraesCS7A02G261000 , TraesCS5D02G297200
Populus -


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cDNA sequences
Sobic.002G259400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
2 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
3 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
4 Sobic.002G268400 expressed protein -
5 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
6 Sobic.010G269100 zinc finger family protein, putative, expressed -
7 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
8 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
9 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
10 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
11 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
12 Sobic.002G008500 Ser/Thr protein phosphatase family protein, putative, expressed -
13 Sobic.004G250300 eukaryotic aspartyl protease domain containing protein, expressed -
14 Sobic.005G155800 actin polymerization factor, putative, expressed K05754: actin related protein 2/3 complex, subunit 5
15 Sobic.010G146600 cyclin-dependent kinase F-1, putative, expressed -
16 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
17 Sobic.006G087400 expressed protein -
18 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
19 Sobic.006G183000 RING zinc finger protein, putative, expressed -
20 Sobic.006G034800 neighbor of COX4, putative, expressed -


Gene co-expression network
sample Sobic002G259400 Sobic002G259400 Sobic003G119400 Sobic003G119400 Sobic002G259400--Sobic003G119400 Sobic004G074300 Sobic004G074300 Sobic002G259400--Sobic004G074300 Sobic001G041200 Sobic001G041200 Sobic002G259400--Sobic001G041200 Sobic002G268400 Sobic002G268400 Sobic002G259400--Sobic002G268400 Sobic009G033900 Sobic009G033900 Sobic002G259400--Sobic009G033900 Sobic010G269100 Sobic010G269100 Sobic002G259400--Sobic010G269100 Sobic006G281500 Sobic006G281500 Sobic002G259400--Sobic006G281500 Sobic001G263000 Sobic001G263000 Sobic002G259400--Sobic001G263000 Sobic010G085200 Sobic010G085200 Sobic002G259400--Sobic010G085200 Sobic003G119400--Sobic004G074300 Sobic003G119400--Sobic001G041200 Sobic003G119400--Sobic002G259400 Sobic010G146600 Sobic010G146600 Sobic003G119400--Sobic010G146600 Sobic006G216000 Sobic006G216000 Sobic003G119400--Sobic006G216000 Sobic006G272200 Sobic006G272200 Sobic003G119400--Sobic006G272200 Sobic006G242300 Sobic006G242300 Sobic003G119400--Sobic006G242300 Sobic003G119400--Sobic002G268400 Sobic002G306400 Sobic002G306400 Sobic003G119400--Sobic002G306400 Sobic004G074300--Sobic002G268400 Sobic004G074300--Sobic003G119400 Sobic001G152000 Sobic001G152000 Sobic004G074300--Sobic001G152000 Sobic004G074300--Sobic009G033900 Sobic004G074300--Sobic001G263000 Sobic004G074300--Sobic002G259400 Sobic010G057900 Sobic010G057900 Sobic004G074300--Sobic010G057900 Sobic004G077600 Sobic004G077600 Sobic004G074300--Sobic004G077600 Sobic006G054500 Sobic006G054500 Sobic004G074300--Sobic006G054500 Sobic001G041200--Sobic006G242300 Sobic001G041200--Sobic003G119400 Sobic006G257001 Sobic006G257001 Sobic001G041200--Sobic006G257001 Sobic006G034800 Sobic006G034800 Sobic001G041200--Sobic006G034800 Sobic001G067900 Sobic001G067900 Sobic001G041200--Sobic001G067900 Sobic001G041200--Sobic002G259400 Sobic001G105100 Sobic001G105100 Sobic001G041200--Sobic001G105100 Sobic006G056600 Sobic006G056600 Sobic001G041200--Sobic006G056600 Sobic001G041200--Sobic009G033900 Sobic002G268400--Sobic010G057900 Sobic002G268400--Sobic001G152000 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic004G356900 Sobic004G356900 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic009G033900--Sobic006G183000 Sobic009G033900--Sobic002G268400 Sobic001G249700 Sobic001G249700 Sobic009G033900--Sobic001G249700 Sobic009G033900--Sobic004G074300 Sobic009G033900--Sobic001G263000 Sobic009G033900--Sobic001G152000 Sobic004G057800 Sobic004G057800 Sobic009G033900--Sobic004G057800 Sobic009G033900--Sobic010G269100 Sobic009G033900--Sobic006G252100 Sobic003G099300 Sobic003G099300 Sobic010G269100--Sobic003G099300 Sobic002G256200 Sobic002G256200 Sobic010G269100--Sobic002G256200 Sobic008G092300 Sobic008G092300 Sobic010G269100--Sobic008G092300 Sobic006G056200 Sobic006G056200 Sobic010G269100--Sobic006G056200 Sobic010G239800 Sobic010G239800 Sobic010G269100--Sobic010G239800 Sobic010G269100--Sobic002G268400 Sobic006G278700 Sobic006G278700 Sobic010G269100--Sobic006G278700 Sobic010G269100--Sobic010G085200 Sobic010G269100--Sobic009G033900 Sobic006G281500--Sobic001G263000 Sobic009G227900 Sobic009G227900 Sobic006G281500--Sobic009G227900 Sobic009G081500 Sobic009G081500 Sobic006G281500--Sobic009G081500 Sobic002G317300 Sobic002G317300 Sobic006G281500--Sobic002G317300 Sobic005G105500 Sobic005G105500 Sobic006G281500--Sobic005G105500 Sobic006G281500--Sobic002G259400 Sobic007G188600 Sobic007G188600 Sobic006G281500--Sobic007G188600 Sobic006G281500--Sobic003G119400 Sobic006G281500--Sobic010G085200 Sobic009G004600 Sobic009G004600 Sobic001G263000--Sobic009G004600 Sobic006G244700 Sobic006G244700 Sobic001G263000--Sobic006G244700 Sobic001G263000--Sobic009G033900 Sobic002G209400 Sobic002G209400 Sobic001G263000--Sobic002G209400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic001G263000--Sobic004G074300 Sobic001G263000--Sobic004G356900 Sobic001G263000--Sobic010G057900 Sobic005G220000 Sobic005G220000 Sobic010G085200--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic010G085200--Sobic002G412700 Sobic006G233000 Sobic006G233000 Sobic010G085200--Sobic006G233000 Sobic009G007700 Sobic009G007700 Sobic010G085200--Sobic009G007700 Sobic010G279700 Sobic010G279700 Sobic010G085200--Sobic010G279700 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic003G314700 Sobic003G314700 Sobic010G085200--Sobic003G314700 Sobic003G209400 Sobic003G209400 Sobic010G085200--Sobic003G209400
Octagon: transcription factors


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