Gene annotation
Transcriptome id Sobic.005G155800.1
Synonym CRK, ARPC5, Sb05g021810
Functional annotation actin polymerization factor, putative, expressed
UniProt C5Y4R1
Pfam PF04699
Panther DB PTHR12644
NCBI CDD KOG3380; Actin-related protein Arp2/3 complex, subunit ARPC5
KEGG Orthology K05754; actin related protein 2/3 complex, subunit 5
Gene Ontology GO:0015629; actin cytoskeleton GO:0005885Arp2/3 protein complex


Orthologs (automatic annotation)
TAIR AT4G01710 : ARP2/3 complex 16 kDa subunit (p16-Arc)
RAP-DB (Rice) LOC_Os11g35360.1 : actin polymerization factor, putative, expressed
MaizeGDB (Corn) Zm00025a034110
Brachypodium KQJ88198
Barley HORVU2Hr1G017920.2 , HORVU2Hr1G017920.1
Wheat TraesCS2D02G105700 , TraesCS2D02G105700 , TraesCS2B02G123100 , TraesCS2B02G123100 , TraesCS2A02G106100 , TraesCS2A02G106100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G087400 expressed protein -
2 Sobic.009G174000 expressed protein -
3 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
4 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
5 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
6 Sobic.008G103800 expressed protein -
7 Sobic.004G232800 expressed protein -
8 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
9 Sobic.001G384400 glucosyltransferase, putative, expressed K03848: alpha-1,3-glucosyltransferase
10 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
11 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
12 Sobic.006G280600 tubulin folding cofactor B, putative, expressed K17262: TBCB, CKAP1, tubulin-specific chaperone B
13 Sobic.001G431000 Sel1 repeat domain containing protein, putative, expressed K14026: SEL1, SEL1 protein
14 Sobic.001G261456 - -
15 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
16 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
17 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
18 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
19 Sobic.006G032900 endonuclease/exonuclease/phosphatase family protein, putative, expressed -
20 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein


Gene co-expression network
sample Sobic005G155800 Sobic005G155800 Sobic006G087400 Sobic006G087400 Sobic005G155800--Sobic006G087400 Sobic009G174000 Sobic009G174000 Sobic005G155800--Sobic009G174000 Sobic002G259400 Sobic002G259400 Sobic005G155800--Sobic002G259400 Sobic001G428800 Sobic001G428800 Sobic005G155800--Sobic001G428800 Sobic010G230600 Sobic010G230600 Sobic005G155800--Sobic010G230600 Sobic008G103800 Sobic008G103800 Sobic005G155800--Sobic008G103800 Sobic004G232800 Sobic004G232800 Sobic005G155800--Sobic004G232800 Sobic007G165900 Sobic007G165900 Sobic005G155800--Sobic007G165900 Sobic001G384400 Sobic001G384400 Sobic005G155800--Sobic001G384400 Sobic006G087400--Sobic005G155800 Sobic001G144600 Sobic001G144600 Sobic006G087400--Sobic001G144600 Sobic006G087400--Sobic002G259400 Sobic006G087400--Sobic009G174000 Sobic001G008800 Sobic001G008800 Sobic006G087400--Sobic001G008800 Sobic002G294100 Sobic002G294100 Sobic006G087400--Sobic002G294100 Sobic002G058700 Sobic002G058700 Sobic006G087400--Sobic002G058700 Sobic009G120500 Sobic009G120500 Sobic006G087400--Sobic009G120500 Sobic006G087400--Sobic010G230600 Sobic001G431000 Sobic001G431000 Sobic009G174000--Sobic001G431000 Sobic009G174000--Sobic005G155800 Sobic001G413200 Sobic001G413200 Sobic009G174000--Sobic001G413200 Sobic007G203300 Sobic007G203300 Sobic009G174000--Sobic007G203300 Sobic003G102600 Sobic003G102600 Sobic009G174000--Sobic003G102600 Sobic009G174000--Sobic010G230600 Sobic004G253900 Sobic004G253900 Sobic009G174000--Sobic004G253900 Sobic009G174000--Sobic006G087400 Sobic004G227300 Sobic004G227300 Sobic009G174000--Sobic004G227300 Sobic003G119400 Sobic003G119400 Sobic002G259400--Sobic003G119400 Sobic004G074300 Sobic004G074300 Sobic002G259400--Sobic004G074300 Sobic001G041200 Sobic001G041200 Sobic002G259400--Sobic001G041200 Sobic002G268400 Sobic002G268400 Sobic002G259400--Sobic002G268400 Sobic009G033900 Sobic009G033900 Sobic002G259400--Sobic009G033900 Sobic010G269100 Sobic010G269100 Sobic002G259400--Sobic010G269100 Sobic006G281500 Sobic006G281500 Sobic002G259400--Sobic006G281500 Sobic001G263000 Sobic001G263000 Sobic002G259400--Sobic001G263000 Sobic010G085200 Sobic010G085200 Sobic002G259400--Sobic010G085200 Sobic001G358500 Sobic001G358500 Sobic001G428800--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G428800--Sobic001G449900 Sobic001G428800--Sobic010G230600 Sobic004G092500 Sobic004G092500 Sobic001G428800--Sobic004G092500 Sobic010G223300 Sobic010G223300 Sobic001G428800--Sobic010G223300 Sobic001G211900 Sobic001G211900 Sobic001G428800--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic001G428800--Sobic001G099900 Sobic010G020400 Sobic010G020400 Sobic001G428800--Sobic010G020400 Sobic009G139300 Sobic009G139300 Sobic001G428800--Sobic009G139300 Sobic010G230600--Sobic001G428800 Sobic010G230600--Sobic001G449900 Sobic007G162100 Sobic007G162100 Sobic010G230600--Sobic007G162100 Sobic010G230600--Sobic010G020400 Sobic006G039400 Sobic006G039400 Sobic010G230600--Sobic006G039400 Sobic010G230600--Sobic004G092500 Sobic001G156900 Sobic001G156900 Sobic010G230600--Sobic001G156900 Sobic007G125000 Sobic007G125000 Sobic010G230600--Sobic007G125000 Sobic008G085700 Sobic008G085700 Sobic010G230600--Sobic008G085700 Sobic008G051100 Sobic008G051100 Sobic008G103800--Sobic008G051100 Sobic008G103800--Sobic005G155800 Sobic004G184000 Sobic004G184000 Sobic008G103800--Sobic004G184000 Sobic004G124100 Sobic004G124100 Sobic008G103800--Sobic004G124100 Sobic010G267400 Sobic010G267400 Sobic008G103800--Sobic010G267400 Sobic001G408800 Sobic001G408800 Sobic008G103800--Sobic001G408800 Sobic008G103800--Sobic006G281500 Sobic006G020900 Sobic006G020900 Sobic008G103800--Sobic006G020900 Sobic005G105500 Sobic005G105500 Sobic008G103800--Sobic005G105500 Sobic010G205300 Sobic010G205300 Sobic004G232800--Sobic010G205300 Sobic004G356900 Sobic004G356900 Sobic004G232800--Sobic004G356900 Sobic009G004600 Sobic009G004600 Sobic004G232800--Sobic009G004600 Sobic006G049700 Sobic006G049700 Sobic004G232800--Sobic006G049700 Sobic009G192000 Sobic009G192000 Sobic004G232800--Sobic009G192000 Sobic010G057900 Sobic010G057900 Sobic004G232800--Sobic010G057900 Sobic003G349300 Sobic003G349300 Sobic004G232800--Sobic003G349300 Sobic004G226800 Sobic004G226800 Sobic004G232800--Sobic004G226800 Sobic002G113900 Sobic002G113900 Sobic004G232800--Sobic002G113900 Sobic004G257100 Sobic004G257100 Sobic007G165900--Sobic004G257100 Sobic006G261400 Sobic006G261400 Sobic007G165900--Sobic006G261400 Sobic008G046500 Sobic008G046500 Sobic007G165900--Sobic008G046500 Sobic004G131800 Sobic004G131800 Sobic007G165900--Sobic004G131800 Sobic006G127600 Sobic006G127600 Sobic007G165900--Sobic006G127600 Sobic001G361300 Sobic001G361300 Sobic007G165900--Sobic001G361300 Sobic001G226700 Sobic001G226700 Sobic007G165900--Sobic001G226700 Sobic001G251100 Sobic001G251100 Sobic007G165900--Sobic001G251100 Sobic010G009800 Sobic010G009800 Sobic007G165900--Sobic010G009800 Sobic006G077200 Sobic006G077200 Sobic001G384400--Sobic006G077200 Sobic001G384400--Sobic001G449900 Sobic003G189600 Sobic003G189600 Sobic001G384400--Sobic003G189600 Sobic007G120500 Sobic007G120500 Sobic001G384400--Sobic007G120500 Sobic003G182300 Sobic003G182300 Sobic001G384400--Sobic003G182300 Sobic003G249600 Sobic003G249600 Sobic001G384400--Sobic003G249600 Sobic010G000800 Sobic010G000800 Sobic001G384400--Sobic010G000800 Sobic001G384400--Sobic001G156900 Sobic007G019300 Sobic007G019300 Sobic001G384400--Sobic007G019300
Octagon: transcription factors


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