Gene annotation
Transcriptome id Sobic.001G428800.1
Synonym VPS9, ATVPS9A, VPS9A, Sb01g040290
Functional annotation vacuolar sorting protein, putative, expressed
UniProt A0A1Z5SAD3
Pfam PF02204
Panther DB PTHR23101 PTHR23101:SF25
NCBI CDD KOG2319; Vacuolar assembly/sorting protein VPS9
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19770 : Vacuolar sorting protein 9 (VPS9) domain
RAP-DB (Rice) LOC_Os03g15650.1 : vacuolar sorting protein, putative, expressed
MaizeGDB (Corn) Zm00025a052816 , Zm00025a006502
Brachypodium KQK22463 , KQK22462 , KQK22461 , KQK22460
Barley HORVU4Hr1G061320.2 , HORVU4Hr1G061320.3 , HORVU4Hr1G061320.1
Wheat TraesCS4B02G215900 , TraesCS4D02G216400 , TraesCS4A02G088300 , TraesCS4A02G088300
Populus -


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cDNA sequences
Sobic.001G428800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G358500 GA20734-PA, putative, expressed -
2 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
3 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
4 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
5 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
6 Sobic.001G211900 methyltransferase, putative, expressed K11437: type I protein arginine methyltransferase
7 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
8 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
9 Sobic.009G139300 expressed protein -
10 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
11 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
12 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
13 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.002G117400 expressed protein -
15 Sobic.008G085700 exocyst complex component 5, putative, expressed -
16 Sobic.001G276200 ACI13, putative, expressed -
17 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
18 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -
19 Sobic.002G268400 expressed protein -
20 Sobic.003G200800 vacuolar ATP synthase subunit d, putative, expressed K02146: ATPeV0D, V-type H+-transporting ATPase subunit d


Gene co-expression network
sample Sobic001G428800 Sobic001G428800 Sobic001G358500 Sobic001G358500 Sobic001G428800--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G428800--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G428800--Sobic010G230600 Sobic004G092500 Sobic004G092500 Sobic001G428800--Sobic004G092500 Sobic010G223300 Sobic010G223300 Sobic001G428800--Sobic010G223300 Sobic001G211900 Sobic001G211900 Sobic001G428800--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic001G428800--Sobic001G099900 Sobic010G020400 Sobic010G020400 Sobic001G428800--Sobic010G020400 Sobic009G139300 Sobic009G139300 Sobic001G428800--Sobic009G139300 Sobic001G358500--Sobic001G428800 Sobic010G192600 Sobic010G192600 Sobic001G358500--Sobic010G192600 Sobic008G018500 Sobic008G018500 Sobic001G358500--Sobic008G018500 Sobic008G085700 Sobic008G085700 Sobic001G358500--Sobic008G085700 Sobic001G467100 Sobic001G467100 Sobic001G358500--Sobic001G467100 Sobic003G182300 Sobic003G182300 Sobic001G358500--Sobic003G182300 Sobic006G039400 Sobic006G039400 Sobic001G358500--Sobic006G039400 Sobic001G049400 Sobic001G049400 Sobic001G358500--Sobic001G049400 Sobic001G358500--Sobic001G211900 Sobic001G449900--Sobic010G223300 Sobic002G020700 Sobic002G020700 Sobic001G449900--Sobic002G020700 Sobic001G449900--Sobic008G085700 Sobic001G301200 Sobic001G301200 Sobic001G449900--Sobic001G301200 Sobic003G189600 Sobic003G189600 Sobic001G449900--Sobic003G189600 Sobic001G449900--Sobic001G428800 Sobic003G029600 Sobic003G029600 Sobic001G449900--Sobic003G029600 Sobic001G449900--Sobic010G020400 Sobic007G005500 Sobic007G005500 Sobic001G449900--Sobic007G005500 Sobic010G230600--Sobic001G428800 Sobic010G230600--Sobic001G449900 Sobic007G162100 Sobic007G162100 Sobic010G230600--Sobic007G162100 Sobic010G230600--Sobic010G020400 Sobic010G230600--Sobic006G039400 Sobic010G230600--Sobic004G092500 Sobic001G156900 Sobic001G156900 Sobic010G230600--Sobic001G156900 Sobic007G125000 Sobic007G125000 Sobic010G230600--Sobic007G125000 Sobic010G230600--Sobic008G085700 Sobic007G132100 Sobic007G132100 Sobic004G092500--Sobic007G132100 Sobic001G493200 Sobic001G493200 Sobic004G092500--Sobic001G493200 Sobic004G092500--Sobic010G223300 Sobic003G143200 Sobic003G143200 Sobic004G092500--Sobic003G143200 Sobic004G092500--Sobic010G020400 Sobic004G257100 Sobic004G257100 Sobic004G092500--Sobic004G257100 Sobic004G039600 Sobic004G039600 Sobic004G092500--Sobic004G039600 Sobic006G077200 Sobic006G077200 Sobic004G092500--Sobic006G077200 Sobic007G167900 Sobic007G167900 Sobic004G092500--Sobic007G167900 Sobic008G055900 Sobic008G055900 Sobic010G223300--Sobic008G055900 Sobic010G223300--Sobic001G449900 Sobic010G223300--Sobic002G020700 Sobic003G338500 Sobic003G338500 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic010G223300--Sobic002G008800 Sobic006G180000 Sobic006G180000 Sobic010G223300--Sobic006G180000 Sobic001G211900--Sobic001G049400 Sobic010G223400 Sobic010G223400 Sobic001G211900--Sobic010G223400 Sobic001G211900--Sobic001G428800 Sobic001G211900--Sobic001G467100 Sobic001G211900--Sobic001G099900 Sobic001G211900--Sobic001G358500 Sobic001G211900--Sobic001G449900 Sobic001G211900--Sobic010G230600 Sobic001G211900--Sobic010G223300 Sobic004G208500 Sobic004G208500 Sobic001G099900--Sobic004G208500 Sobic001G015400 Sobic001G015400 Sobic001G099900--Sobic001G015400 Sobic001G099900--Sobic001G467100 Sobic002G150700 Sobic002G150700 Sobic001G099900--Sobic002G150700 Sobic003G146600 Sobic003G146600 Sobic001G099900--Sobic003G146600 Sobic001G474400 Sobic001G474400 Sobic001G099900--Sobic001G474400 Sobic001G099900--Sobic001G428800 Sobic006G142400 Sobic006G142400 Sobic001G099900--Sobic006G142400 Sobic001G099900--Sobic001G156900 Sobic010G020400--Sobic002G020700 Sobic010G020400--Sobic001G049400 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic010G020400--Sobic002G008800 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic010G020400--Sobic001G333100 Sobic010G020400--Sobic010G223300 Sobic009G139300--Sobic001G428800 Sobic002G256200 Sobic002G256200 Sobic009G139300--Sobic002G256200 Sobic003G422900 Sobic003G422900 Sobic009G139300--Sobic003G422900 Sobic002G268400 Sobic002G268400 Sobic009G139300--Sobic002G268400 Sobic001G014200 Sobic001G014200 Sobic009G139300--Sobic001G014200 Sobic004G345400 Sobic004G345400 Sobic009G139300--Sobic004G345400 Sobic009G139300--Sobic001G358500 Sobic009G214900 Sobic009G214900 Sobic009G139300--Sobic009G214900 Sobic002G117400 Sobic002G117400 Sobic009G139300--Sobic002G117400
Octagon: transcription factors


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