Gene annotation
Transcriptome id Sobic.001G358500.1
Synonym Sb01g034230
Functional annotation GA20734-PA, putative, expressed
UniProt C5WYN7
Pfam PF07052
Panther DB PTHR13486 PTHR13486:SF2
NCBI CDD KOG3345; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02330 : -
RAP-DB (Rice) LOC_Os03g25720.1 : GA20734-PA, putative, expressed
MaizeGDB (Corn) Zm00025a002649
Brachypodium PNT77335 , KQK21527 , KQK21530 , KQK21529 , KQK21528
Barley HORVU6Hr1G093090.3 , HORVU6Hr1G093090.2 , HORVU6Hr1G093090.1
Wheat TraesCS6B02G452500 , TraesCS6D02G391200 , TraesCS6A02G407300 , TraesCS6A02G407200 , TraesCS6B02G452700 , TraesCS6A02G407200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
2 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
3 Sobic.008G018500 expressed protein -
4 Sobic.008G085700 exocyst complex component 5, putative, expressed -
5 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
6 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
7 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
8 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
9 Sobic.001G211900 methyltransferase, putative, expressed K11437: type I protein arginine methyltransferase
10 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
11 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
13 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
14 Sobic.002G136400 expressed protein -
15 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
16 Sobic.003G395300 TBC domain containing protein, expressed -
17 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
18 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
19 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
20 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -


Gene co-expression network
sample Sobic001G358500 Sobic001G358500 Sobic001G428800 Sobic001G428800 Sobic001G358500--Sobic001G428800 Sobic010G192600 Sobic010G192600 Sobic001G358500--Sobic010G192600 Sobic008G018500 Sobic008G018500 Sobic001G358500--Sobic008G018500 Sobic008G085700 Sobic008G085700 Sobic001G358500--Sobic008G085700 Sobic001G467100 Sobic001G467100 Sobic001G358500--Sobic001G467100 Sobic003G182300 Sobic003G182300 Sobic001G358500--Sobic003G182300 Sobic006G039400 Sobic006G039400 Sobic001G358500--Sobic006G039400 Sobic001G049400 Sobic001G049400 Sobic001G358500--Sobic001G049400 Sobic001G211900 Sobic001G211900 Sobic001G358500--Sobic001G211900 Sobic001G428800--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G428800--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G428800--Sobic010G230600 Sobic004G092500 Sobic004G092500 Sobic001G428800--Sobic004G092500 Sobic010G223300 Sobic010G223300 Sobic001G428800--Sobic010G223300 Sobic001G428800--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic001G428800--Sobic001G099900 Sobic010G020400 Sobic010G020400 Sobic001G428800--Sobic010G020400 Sobic009G139300 Sobic009G139300 Sobic001G428800--Sobic009G139300 Sobic001G097900 Sobic001G097900 Sobic010G192600--Sobic001G097900 Sobic001G474400 Sobic001G474400 Sobic010G192600--Sobic001G474400 Sobic010G192600--Sobic001G358500 Sobic007G118500 Sobic007G118500 Sobic010G192600--Sobic007G118500 Sobic010G192600--Sobic008G085700 Sobic005G110499 Sobic005G110499 Sobic010G192600--Sobic005G110499 Sobic002G364900 Sobic002G364900 Sobic010G192600--Sobic002G364900 Sobic001G115700 Sobic001G115700 Sobic010G192600--Sobic001G115700 Sobic003G304400 Sobic003G304400 Sobic010G192600--Sobic003G304400 Sobic008G018500--Sobic001G358500 Sobic002G428100 Sobic002G428100 Sobic008G018500--Sobic002G428100 Sobic007G208000 Sobic007G208000 Sobic008G018500--Sobic007G208000 Sobic003G222700 Sobic003G222700 Sobic008G018500--Sobic003G222700 Sobic004G084500 Sobic004G084500 Sobic008G018500--Sobic004G084500 Sobic001G389200 Sobic001G389200 Sobic008G018500--Sobic001G389200 Sobic009G199500 Sobic009G199500 Sobic008G018500--Sobic009G199500 Sobic008G018500--Sobic001G428800 Sobic003G394200 Sobic003G394200 Sobic008G018500--Sobic003G394200 Sobic002G020700 Sobic002G020700 Sobic008G085700--Sobic002G020700 Sobic008G085700--Sobic001G449900 Sobic002G070600 Sobic002G070600 Sobic008G085700--Sobic002G070600 Sobic008G085700--Sobic010G020400 Sobic008G055900 Sobic008G055900 Sobic008G085700--Sobic008G055900 Sobic008G085700--Sobic005G110499 Sobic008G085700--Sobic001G049400 Sobic001G161700 Sobic001G161700 Sobic008G085700--Sobic001G161700 Sobic008G085700--Sobic010G192600 Sobic004G208500 Sobic004G208500 Sobic001G467100--Sobic004G208500 Sobic010G172400 Sobic010G172400 Sobic001G467100--Sobic010G172400 Sobic001G467100--Sobic001G474400 Sobic001G467100--Sobic001G099900 Sobic001G467100--Sobic003G222700 Sobic007G145400 Sobic007G145400 Sobic001G467100--Sobic007G145400 Sobic005G114500 Sobic005G114500 Sobic001G467100--Sobic005G114500 Sobic001G467100--Sobic001G161700 Sobic001G467100--Sobic005G110499 Sobic010G223400 Sobic010G223400 Sobic003G182300--Sobic010G223400 Sobic003G363700 Sobic003G363700 Sobic003G182300--Sobic003G363700 Sobic003G182300--Sobic001G449900 Sobic003G182300--Sobic001G474400 Sobic003G193500 Sobic003G193500 Sobic003G182300--Sobic003G193500 Sobic010G169900 Sobic010G169900 Sobic003G182300--Sobic010G169900 Sobic001G015400 Sobic001G015400 Sobic003G182300--Sobic001G015400 Sobic007G042900 Sobic007G042900 Sobic003G182300--Sobic007G042900 Sobic003G181700 Sobic003G181700 Sobic003G182300--Sobic003G181700 Sobic006G093300 Sobic006G093300 Sobic006G039400--Sobic006G093300 Sobic001G405600 Sobic001G405600 Sobic006G039400--Sobic001G405600 Sobic003G296900 Sobic003G296900 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic006G039400--Sobic003G182300 Sobic006G039400--Sobic010G230600 Sobic007G162100 Sobic007G162100 Sobic006G039400--Sobic007G162100 Sobic007G087000 Sobic007G087000 Sobic006G039400--Sobic007G087000 Sobic001G283600 Sobic001G283600 Sobic006G039400--Sobic001G283600 Sobic001G049400--Sobic010G020400 Sobic001G465400 Sobic001G465400 Sobic001G049400--Sobic001G465400 Sobic001G049400--Sobic008G085700 Sobic004G078700 Sobic004G078700 Sobic001G049400--Sobic004G078700 Sobic001G049400--Sobic001G211900 Sobic003G302200 Sobic003G302200 Sobic001G049400--Sobic003G302200 Sobic001G049400--Sobic008G055900 Sobic003G338500 Sobic003G338500 Sobic001G049400--Sobic003G338500 Sobic007G173700 Sobic007G173700 Sobic001G049400--Sobic007G173700 Sobic001G211900--Sobic001G049400 Sobic001G211900--Sobic010G223400 Sobic001G211900--Sobic001G428800 Sobic001G211900--Sobic001G467100 Sobic001G211900--Sobic001G099900 Sobic001G211900--Sobic001G358500 Sobic001G211900--Sobic001G449900 Sobic001G211900--Sobic010G230600 Sobic001G211900--Sobic010G223300
Octagon: transcription factors


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