Gene annotation
Transcriptome id Sobic.003G304400.1
Synonym Sb03g035300, TIM50, emb1860
Functional annotation NLI interacting factor-like phosphatase, putative, expressed
UniProt C5XKU6
Pfam PF03031
Panther DB PTHR12210 PTHR12210:SF55
NCBI CDD KOG2832; TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
KEGG Orthology K17496; mitochondrial import inner membrane translocase subunit TIM50
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55900 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os01g55700.1 : NLI interacting factor-like phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a039972
Brachypodium -
Barley -
Wheat TraesCS3A02G303400 , TraesCS3A02G303400 , TraesCS3A02G303400 , TraesCS3D02G298400 , TraesCS3D02G298400 , TraesCS3D02G298400 , TraesCS3D02G298400 , TraesCS3B02G332900
Populus -


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cDNA sequences
Sobic.003G304400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
2 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
3 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
4 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
5 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
6 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
7 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
8 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
9 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
10 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
11 Sobic.006G282200 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed K12666: OST1, oligosaccharyltransferase complex subunit alpha (ribophorin I)
12 Sobic.001G358500 GA20734-PA, putative, expressed -
13 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
14 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
15 Sobic.002G408900 adenyl cyclase, putative, expressed -
16 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
17 Sobic.002G343200 homeodomain-like, putative, expressed -
18 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
19 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
20 Sobic.004G186900 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G304400 Sobic003G304400 Sobic002G364900 Sobic002G364900 Sobic003G304400--Sobic002G364900 Sobic003G397900 Sobic003G397900 Sobic003G304400--Sobic003G397900 Sobic002G398700 Sobic002G398700 Sobic003G304400--Sobic002G398700 Sobic001G474400 Sobic001G474400 Sobic003G304400--Sobic001G474400 Sobic002G150700 Sobic002G150700 Sobic003G304400--Sobic002G150700 Sobic010G192600 Sobic010G192600 Sobic003G304400--Sobic010G192600 Sobic003G202100 Sobic003G202100 Sobic003G304400--Sobic003G202100 Sobic001G015400 Sobic001G015400 Sobic003G304400--Sobic001G015400 Sobic006G265600 Sobic006G265600 Sobic003G304400--Sobic006G265600 Sobic002G364900--Sobic003G304400 Sobic002G364900--Sobic010G192600 Sobic002G364900--Sobic006G265600 Sobic002G364900--Sobic001G015400 Sobic002G227500 Sobic002G227500 Sobic002G364900--Sobic002G227500 Sobic006G106300 Sobic006G106300 Sobic002G364900--Sobic006G106300 Sobic001G099900 Sobic001G099900 Sobic002G364900--Sobic001G099900 Sobic001G085800 Sobic001G085800 Sobic002G364900--Sobic001G085800 Sobic002G364900--Sobic001G474400 Sobic001G455000 Sobic001G455000 Sobic003G397900--Sobic001G455000 Sobic003G397900--Sobic006G265600 Sobic003G397900--Sobic001G474400 Sobic003G397900--Sobic003G304400 Sobic002G075900 Sobic002G075900 Sobic003G397900--Sobic002G075900 Sobic001G445500 Sobic001G445500 Sobic003G397900--Sobic001G445500 Sobic001G151600 Sobic001G151600 Sobic003G397900--Sobic001G151600 Sobic003G397900--Sobic001G015400 Sobic010G223400 Sobic010G223400 Sobic003G397900--Sobic010G223400 Sobic002G398700--Sobic003G304400 Sobic002G398700--Sobic006G106300 Sobic010G091400 Sobic010G091400 Sobic002G398700--Sobic010G091400 Sobic002G398700--Sobic001G015400 Sobic002G398700--Sobic002G150700 Sobic005G026400 Sobic005G026400 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G398700--Sobic002G364900 Sobic005G110499 Sobic005G110499 Sobic001G474400--Sobic005G110499 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G097900 Sobic001G097900 Sobic001G474400--Sobic001G097900 Sobic005G114500 Sobic005G114500 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic001G474400--Sobic010G223400 Sobic001G467100 Sobic001G467100 Sobic001G474400--Sobic001G467100 Sobic001G474400--Sobic006G265600 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic003G146600 Sobic003G146600 Sobic002G150700--Sobic003G146600 Sobic002G150700--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic002G150700--Sobic004G208500 Sobic002G150700--Sobic002G398700 Sobic001G145400 Sobic001G145400 Sobic002G150700--Sobic001G145400 Sobic002G150700--Sobic003G304400 Sobic010G192600--Sobic001G097900 Sobic010G192600--Sobic001G474400 Sobic001G358500 Sobic001G358500 Sobic010G192600--Sobic001G358500 Sobic007G118500 Sobic007G118500 Sobic010G192600--Sobic007G118500 Sobic008G085700 Sobic008G085700 Sobic010G192600--Sobic008G085700 Sobic010G192600--Sobic005G110499 Sobic010G192600--Sobic002G364900 Sobic001G115700 Sobic001G115700 Sobic010G192600--Sobic001G115700 Sobic010G192600--Sobic003G304400 Sobic009G260700 Sobic009G260700 Sobic003G202100--Sobic009G260700 Sobic008G171400 Sobic008G171400 Sobic003G202100--Sobic008G171400 Sobic001G304000 Sobic001G304000 Sobic003G202100--Sobic001G304000 Sobic001G537100 Sobic001G537100 Sobic003G202100--Sobic001G537100 Sobic003G202100--Sobic003G304400 Sobic003G392600 Sobic003G392600 Sobic003G202100--Sobic003G392600 Sobic002G071100 Sobic002G071100 Sobic003G202100--Sobic002G071100 Sobic003G388900 Sobic003G388900 Sobic003G202100--Sobic003G388900 Sobic003G166500 Sobic003G166500 Sobic003G202100--Sobic003G166500 Sobic001G015400--Sobic001G099900 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic001G015400--Sobic002G398700 Sobic001G015400--Sobic006G106300 Sobic006G265600--Sobic003G397900 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic006G265600--Sobic001G151600 Sobic006G265600--Sobic002G075900 Sobic002G160700 Sobic002G160700 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic006G265600--Sobic002G364900
Octagon: transcription factors


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