Gene annotation
Transcriptome id Sobic.004G186900.1
Synonym Sb04g023540, ATRBP47C\', RBP47C\'
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XVL1
Pfam PF00076
Panther DB PTHR24012:SF488 PTHR24012
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G47500 : RNA-binding protein 47C\'
RAP-DB (Rice) LOC_Os04g37690.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a056169 , Zm00025a031694 , Zm00025a020769
Brachypodium KQJ82883 , KQJ99982 , KQJ90544
Barley HORVU7Hr1G066510.3 , HORVU7Hr1G066510.2 , HORVU7Hr1G066510.5 , HORVU7Hr1G066510.4 , HORVU7Hr1G066510.8 , HORVU5Hr1G069180.9 , HORVU5Hr1G069180.5 , HORVU7Hr1G066510.7 , HORVU7Hr1G066510.6 , HORVU7Hr1G066510.9 , HORVU6Hr1G048390.1 , HORVU6Hr1G048390.2 , HORVU6Hr1G048390.3 , HORVU6Hr1G048390.4 , HORVU6Hr1G048390.5 , HORVU6Hr1G048390.6 , HORVU5Hr1G069180.11 , HORVU7Hr1G066510.13 , HORVU7Hr1G066510.12 , HORVU7Hr1G066510.11 , HORVU7Hr1G066510.10 , HORVU7Hr1G066510.14 , HORVU5Hr1G069180.3 , HORVU5Hr1G069180.2 , HORVU5Hr1G069180.1 , HORVU5Hr1G069180.6 , HORVU2Hr1G078910.10 , HORVU2Hr1G078910.9 , HORVU2Hr1G078910.8 , HORVU2Hr1G078910.5 , HORVU2Hr1G078910.4 , HORVU2Hr1G078910.7 , HORVU2Hr1G078910.6 , HORVU2Hr1G078910.3 , HORVU2Hr1G078910.2
Wheat TraesCS6B02G128900 , TraesCS6B02G128900 , TraesCS5B02G241400 , TraesCS6A02G204400 , TraesCS6A02G204400 , TraesCS6A02G204400 , TraesCS6A02G204400 , TraesCS6B02G228100 , TraesCS6B02G228100 , TraesCS6B02G228100 , TraesCS6D02G081700 , TraesCS6D02G081700 , TraesCS6D02G081700 , TraesCS2B02G335700 , TraesCS2B02G335700 , TraesCS2B02G335700 , TraesCS7A02G295700 , TraesCS7A02G295700 , TraesCS7A02G295700 , TraesCS6A02G100800 , TraesCS2A02G317700 , TraesCS2A02G317700 , TraesCS2A02G317700 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS5D02G250100 , TraesCS5A02G243500 , TraesCS6D02G184600 , TraesCS6D02G184600 , TraesCS6D02G184600
Populus -


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cDNA sequences
Sobic.004G186900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
2 Sobic.002G395500 ATP12 ATPase, putative, expressed K07556: ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
3 Sobic.007G028500 expressed protein -
4 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
5 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
6 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
7 Sobic.008G168200 expressed protein -
8 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
9 Sobic.006G012700 expressed protein -
10 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
11 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
12 Sobic.006G115100 expressed protein -
13 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
14 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
15 Sobic.001G047600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
16 Sobic.002G084800 expressed protein -
17 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
18 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
19 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
20 Sobic.001G115700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K03934: NADH dehydrogenase (ubiquinone) Fe-S protein 1


Gene co-expression network
sample Sobic004G186900 Sobic004G186900 Sobic001G465400 Sobic001G465400 Sobic004G186900--Sobic001G465400 Sobic002G395500 Sobic002G395500 Sobic004G186900--Sobic002G395500 Sobic007G028500 Sobic007G028500 Sobic004G186900--Sobic007G028500 Sobic003G202100 Sobic003G202100 Sobic004G186900--Sobic003G202100 Sobic001G389200 Sobic001G389200 Sobic004G186900--Sobic001G389200 Sobic003G304400 Sobic003G304400 Sobic004G186900--Sobic003G304400 Sobic008G168200 Sobic008G168200 Sobic004G186900--Sobic008G168200 Sobic006G106300 Sobic006G106300 Sobic004G186900--Sobic006G106300 Sobic006G012700 Sobic006G012700 Sobic004G186900--Sobic006G012700 Sobic003G034900 Sobic003G034900 Sobic001G465400--Sobic003G034900 Sobic001G465400--Sobic006G012700 Sobic001G115700 Sobic001G115700 Sobic001G465400--Sobic001G115700 Sobic001G378200 Sobic001G378200 Sobic001G465400--Sobic001G378200 Sobic004G078700 Sobic004G078700 Sobic001G465400--Sobic004G078700 Sobic004G000100 Sobic004G000100 Sobic001G465400--Sobic004G000100 Sobic001G047600 Sobic001G047600 Sobic001G465400--Sobic001G047600 Sobic001G008100 Sobic001G008100 Sobic001G465400--Sobic001G008100 Sobic004G347600 Sobic004G347600 Sobic001G465400--Sobic004G347600 Sobic002G395500--Sobic001G389200 Sobic002G395500--Sobic008G168200 Sobic003G394500 Sobic003G394500 Sobic002G395500--Sobic003G394500 Sobic002G395500--Sobic007G028500 Sobic003G190600 Sobic003G190600 Sobic002G395500--Sobic003G190600 Sobic002G395500--Sobic006G012700 Sobic002G395500--Sobic001G047600 Sobic004G254800 Sobic004G254800 Sobic002G395500--Sobic004G254800 Sobic006G060000 Sobic006G060000 Sobic002G395500--Sobic006G060000 Sobic007G028500--Sobic002G395500 Sobic002G238400 Sobic002G238400 Sobic007G028500--Sobic002G238400 Sobic003G156400 Sobic003G156400 Sobic007G028500--Sobic003G156400 Sobic002G355800 Sobic002G355800 Sobic007G028500--Sobic002G355800 Sobic007G028500--Sobic004G186900 Sobic002G200000 Sobic002G200000 Sobic007G028500--Sobic002G200000 Sobic007G028500--Sobic006G012700 Sobic008G087900 Sobic008G087900 Sobic007G028500--Sobic008G087900 Sobic007G028500--Sobic001G465400 Sobic009G260700 Sobic009G260700 Sobic003G202100--Sobic009G260700 Sobic008G171400 Sobic008G171400 Sobic003G202100--Sobic008G171400 Sobic001G304000 Sobic001G304000 Sobic003G202100--Sobic001G304000 Sobic001G537100 Sobic001G537100 Sobic003G202100--Sobic001G537100 Sobic003G202100--Sobic003G304400 Sobic003G392600 Sobic003G392600 Sobic003G202100--Sobic003G392600 Sobic002G071100 Sobic002G071100 Sobic003G202100--Sobic002G071100 Sobic003G388900 Sobic003G388900 Sobic003G202100--Sobic003G388900 Sobic003G166500 Sobic003G166500 Sobic003G202100--Sobic003G166500 Sobic001G389200--Sobic006G060000 Sobic001G389200--Sobic008G168200 Sobic001G389200--Sobic002G395500 Sobic001G389200--Sobic002G355800 Sobic001G389200--Sobic004G254800 Sobic001G389200--Sobic004G078700 Sobic007G172700 Sobic007G172700 Sobic001G389200--Sobic007G172700 Sobic010G169900 Sobic010G169900 Sobic001G389200--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic001G389200--Sobic009G122500 Sobic002G364900 Sobic002G364900 Sobic003G304400--Sobic002G364900 Sobic003G397900 Sobic003G397900 Sobic003G304400--Sobic003G397900 Sobic002G398700 Sobic002G398700 Sobic003G304400--Sobic002G398700 Sobic001G474400 Sobic001G474400 Sobic003G304400--Sobic001G474400 Sobic002G150700 Sobic002G150700 Sobic003G304400--Sobic002G150700 Sobic010G192600 Sobic010G192600 Sobic003G304400--Sobic010G192600 Sobic003G304400--Sobic003G202100 Sobic001G015400 Sobic001G015400 Sobic003G304400--Sobic001G015400 Sobic006G265600 Sobic006G265600 Sobic003G304400--Sobic006G265600 Sobic008G168200--Sobic001G389200 Sobic001G205100 Sobic001G205100 Sobic008G168200--Sobic001G205100 Sobic008G168200--Sobic002G395500 Sobic008G168200--Sobic006G060000 Sobic008G168200--Sobic003G156400 Sobic008G168200--Sobic003G394500 Sobic008G168200--Sobic006G012700 Sobic008G168200--Sobic008G171400 Sobic003G409900 Sobic003G409900 Sobic008G168200--Sobic003G409900 Sobic006G106300--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic006G106300--Sobic003G021600 Sobic006G106300--Sobic002G398700 Sobic001G097900 Sobic001G097900 Sobic006G106300--Sobic001G097900 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic006G106300--Sobic001G474400 Sobic006G106300--Sobic002G364900 Sobic006G012700--Sobic001G465400 Sobic001G378800 Sobic001G378800 Sobic006G012700--Sobic001G378800 Sobic004G093600 Sobic004G093600 Sobic006G012700--Sobic004G093600 Sobic006G012700--Sobic001G047600 Sobic006G012700--Sobic003G156400 Sobic006G012700--Sobic001G378200 Sobic006G012700--Sobic003G034900 Sobic006G012700--Sobic002G395500 Sobic006G012700--Sobic001G389200
Octagon: transcription factors


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