Gene annotation
Transcriptome id Sobic.010G250000.1
Synonym Sb10g028830
Functional annotation 60S ribosomal protein L8, putative, expressed
UniProt C5Z8W0 , A0A109NDD1 , C6JSF4 , A1E9W6
Pfam PF00181 PF03947
Panther DB PTHR13691 PTHR13691:SF5
NCBI CDD KOG0438; Mitochondrial/chloroplast ribosomal protein L2
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:0016740transferase activity GO:0015934large ribosomal subunit GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT2G44065 : Ribosomal protein L2 family
RAP-DB (Rice) LOC_Os12g38000.1 : 60S ribosomal protein L8, putative, expressed
MaizeGDB (Corn) Zm00025a007518 , Zm00025a031257
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G250000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
2 Sobic.003G194300 50S ribosomal protein, putative, expressed K02914: RP-L34, MRPL34, large subunit ribosomal protein L34
3 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
4 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
5 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
6 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
7 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
8 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
9 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
10 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
11 Sobic.007G146600 conserved oligomeric Golgi complex component 3, putative, expressed -
12 Sobic.003G120700 glycosyl transferase, group 1 domain containing protein, expressed -
13 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
14 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
15 Sobic.007G208000 geranylgeranyl transferase type-2 subunit beta, putative, expressed K05956: geranylgeranyl transferase type-2 subunit beta
16 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
17 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
18 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
19 Sobic.001G358500 GA20734-PA, putative, expressed -
20 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6


Gene co-expression network
sample Sobic010G250000 Sobic010G250000 Sobic009G063800 Sobic009G063800 Sobic010G250000--Sobic009G063800 Sobic003G194300 Sobic003G194300 Sobic010G250000--Sobic003G194300 Sobic003G023200 Sobic003G023200 Sobic010G250000--Sobic003G023200 Sobic008G072500 Sobic008G072500 Sobic010G250000--Sobic008G072500 Sobic010G192600 Sobic010G192600 Sobic010G250000--Sobic010G192600 Sobic006G041800 Sobic006G041800 Sobic010G250000--Sobic006G041800 Sobic007G148400 Sobic007G148400 Sobic010G250000--Sobic007G148400 Sobic001G286100 Sobic001G286100 Sobic010G250000--Sobic001G286100 Sobic002G276800 Sobic002G276800 Sobic010G250000--Sobic002G276800 Sobic002G182000 Sobic002G182000 Sobic009G063800--Sobic002G182000 Sobic009G063800--Sobic010G250000 Sobic007G146600 Sobic007G146600 Sobic009G063800--Sobic007G146600 Sobic001G309200 Sobic001G309200 Sobic009G063800--Sobic001G309200 Sobic002G322400 Sobic002G322400 Sobic009G063800--Sobic002G322400 Sobic010G018900 Sobic010G018900 Sobic009G063800--Sobic010G018900 Sobic001G203600 Sobic001G203600 Sobic009G063800--Sobic001G203600 Sobic002G348400 Sobic002G348400 Sobic009G063800--Sobic002G348400 Sobic009G063800--Sobic008G072500 Sobic003G194300--Sobic010G250000 Sobic001G167500 Sobic001G167500 Sobic003G194300--Sobic001G167500 Sobic003G388700 Sobic003G388700 Sobic003G194300--Sobic003G388700 Sobic009G218000 Sobic009G218000 Sobic003G194300--Sobic009G218000 Sobic007G140100 Sobic007G140100 Sobic003G194300--Sobic007G140100 Sobic003G194300--Sobic001G309200 Sobic008G118300 Sobic008G118300 Sobic003G194300--Sobic008G118300 Sobic003G194300--Sobic001G286100 Sobic003G113400 Sobic003G113400 Sobic003G194300--Sobic003G113400 Sobic002G066800 Sobic002G066800 Sobic003G023200--Sobic002G066800 Sobic006G212900 Sobic006G212900 Sobic003G023200--Sobic006G212900 Sobic003G023200--Sobic010G250000 Sobic003G256800 Sobic003G256800 Sobic003G023200--Sobic003G256800 Sobic001G097900 Sobic001G097900 Sobic003G023200--Sobic001G097900 Sobic005G087300 Sobic005G087300 Sobic003G023200--Sobic005G087300 Sobic002G426100 Sobic002G426100 Sobic003G023200--Sobic002G426100 Sobic001G229300 Sobic001G229300 Sobic003G023200--Sobic001G229300 Sobic007G122700 Sobic007G122700 Sobic003G023200--Sobic007G122700 Sobic003G049200 Sobic003G049200 Sobic008G072500--Sobic003G049200 Sobic003G260600 Sobic003G260600 Sobic008G072500--Sobic003G260600 Sobic010G133400 Sobic010G133400 Sobic008G072500--Sobic010G133400 Sobic001G378800 Sobic001G378800 Sobic008G072500--Sobic001G378800 Sobic002G193500 Sobic002G193500 Sobic008G072500--Sobic002G193500 Sobic006G232800 Sobic006G232800 Sobic008G072500--Sobic006G232800 Sobic003G048600 Sobic003G048600 Sobic008G072500--Sobic003G048600 Sobic007G118500 Sobic007G118500 Sobic008G072500--Sobic007G118500 Sobic010G086300 Sobic010G086300 Sobic008G072500--Sobic010G086300 Sobic010G192600--Sobic001G097900 Sobic001G474400 Sobic001G474400 Sobic010G192600--Sobic001G474400 Sobic001G358500 Sobic001G358500 Sobic010G192600--Sobic001G358500 Sobic010G192600--Sobic007G118500 Sobic008G085700 Sobic008G085700 Sobic010G192600--Sobic008G085700 Sobic005G110499 Sobic005G110499 Sobic010G192600--Sobic005G110499 Sobic002G364900 Sobic002G364900 Sobic010G192600--Sobic002G364900 Sobic001G115700 Sobic001G115700 Sobic010G192600--Sobic001G115700 Sobic003G304400 Sobic003G304400 Sobic010G192600--Sobic003G304400 Sobic007G119600 Sobic007G119600 Sobic006G041800--Sobic007G119600 Sobic001G008100 Sobic001G008100 Sobic006G041800--Sobic001G008100 Sobic003G276100 Sobic003G276100 Sobic006G041800--Sobic003G276100 Sobic001G485300 Sobic001G485300 Sobic006G041800--Sobic001G485300 Sobic006G041800--Sobic002G276800 Sobic007G012900 Sobic007G012900 Sobic006G041800--Sobic007G012900 Sobic006G041800--Sobic003G388700 Sobic001G387800 Sobic001G387800 Sobic006G041800--Sobic001G387800 Sobic002G255400 Sobic002G255400 Sobic006G041800--Sobic002G255400 Sobic007G218600 Sobic007G218600 Sobic007G148400--Sobic007G218600 Sobic003G308300 Sobic003G308300 Sobic007G148400--Sobic003G308300 Sobic006G222500 Sobic006G222500 Sobic007G148400--Sobic006G222500 Sobic009G186700 Sobic009G186700 Sobic007G148400--Sobic009G186700 Sobic001G050500 Sobic001G050500 Sobic007G148400--Sobic001G050500 Sobic007G148400--Sobic007G146600 Sobic003G255700 Sobic003G255700 Sobic007G148400--Sobic003G255700 Sobic001G305900 Sobic001G305900 Sobic007G148400--Sobic001G305900 Sobic007G148400--Sobic002G276800 Sobic004G069400 Sobic004G069400 Sobic001G286100--Sobic004G069400 Sobic001G286100--Sobic008G118300 Sobic003G418400 Sobic003G418400 Sobic001G286100--Sobic003G418400 Sobic007G201000 Sobic007G201000 Sobic001G286100--Sobic007G201000 Sobic001G286100--Sobic010G250000 Sobic001G135200 Sobic001G135200 Sobic001G286100--Sobic001G135200 Sobic006G271000 Sobic006G271000 Sobic001G286100--Sobic006G271000 Sobic001G286100--Sobic009G063800 Sobic001G286100--Sobic001G309200 Sobic002G276800--Sobic001G485300 Sobic002G276800--Sobic001G008100 Sobic002G276800--Sobic007G148400 Sobic002G276800--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic002G276800--Sobic003G190600 Sobic003G058500 Sobic003G058500 Sobic002G276800--Sobic003G058500 Sobic001G061200 Sobic001G061200 Sobic002G276800--Sobic001G061200 Sobic001G193100 Sobic001G193100 Sobic002G276800--Sobic001G193100 Sobic002G401700 Sobic002G401700 Sobic002G276800--Sobic002G401700
Octagon: transcription factors


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