Gene annotation
Transcriptome id Sobic.007G208000.1
Synonym AtRGTB1, Sb07g027520, RGTB1
Functional annotation geranylgeranyl transferase type-2 subunit beta, putative, expressed
UniProt C5YIP6
Pfam PF00432
Panther DB PTHR11774 PTHR11774:SF11
NCBI CDD -
KEGG Orthology K05956; geranylgeranyl transferase type-2 subunit beta
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT5G12210 : RAB geranylgeranyl transferase beta subunit 1
RAP-DB (Rice) LOC_Os08g40140.1 : geranylgeranyl transferase type-2 subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a005124
Brachypodium KQJ98950
Barley HORVU7Hr1G051140.2 , HORVU7Hr1G051140.3 , HORVU7Hr1G051140.1 , HORVU7Hr1G051140.6 , HORVU7Hr1G051140.4 , HORVU7Hr1G051140.5
Wheat TraesCS7D02G247200 , TraesCS7B02G143100 , TraesCS7A02G248400 , TraesCS7A02G248400
Populus -


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cDNA sequences
Sobic.007G208000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G060300 DNA binding protein, putative, expressed -
2 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
3 Sobic.008G018500 expressed protein -
4 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
5 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
6 Sobic.001G455000 glycosyl hydrolase, family 31, putative, expressed K05546: mannosyl-oligosaccharide alpha-1,3-glucosidase
7 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
8 Sobic.001G358500 GA20734-PA, putative, expressed -
9 Sobic.010G028400 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
10 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
11 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
12 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
13 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
14 Sobic.001G343000 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
15 Sobic.003G404100 CBS domain-containing protein, putative, expressed -
16 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
17 Sobic.008G072200 coatomer subunit delta, putative, expressed -
18 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
19 Sobic.004G040700 expressed protein -
20 Sobic.006G282200 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed K12666: OST1, oligosaccharyltransferase complex subunit alpha (ribophorin I)


Gene co-expression network
sample Sobic007G208000 Sobic007G208000 Sobic004G060300 Sobic004G060300 Sobic007G208000--Sobic004G060300 Sobic010G192600 Sobic010G192600 Sobic007G208000--Sobic010G192600 Sobic008G018500 Sobic008G018500 Sobic007G208000--Sobic008G018500 Sobic010G250000 Sobic010G250000 Sobic007G208000--Sobic010G250000 Sobic002G029300 Sobic002G029300 Sobic007G208000--Sobic002G029300 Sobic001G455000 Sobic001G455000 Sobic007G208000--Sobic001G455000 Sobic003G005900 Sobic003G005900 Sobic007G208000--Sobic003G005900 Sobic001G358500 Sobic001G358500 Sobic007G208000--Sobic001G358500 Sobic010G028400 Sobic010G028400 Sobic007G208000--Sobic010G028400 Sobic007G118500 Sobic007G118500 Sobic004G060300--Sobic007G118500 Sobic009G122500 Sobic009G122500 Sobic004G060300--Sobic009G122500 Sobic003G394500 Sobic003G394500 Sobic004G060300--Sobic003G394500 Sobic001G335000 Sobic001G335000 Sobic004G060300--Sobic001G335000 Sobic003G346400 Sobic003G346400 Sobic004G060300--Sobic003G346400 Sobic007G030100 Sobic007G030100 Sobic004G060300--Sobic007G030100 Sobic001G389200 Sobic001G389200 Sobic004G060300--Sobic001G389200 Sobic004G084500 Sobic004G084500 Sobic004G060300--Sobic004G084500 Sobic001G012900 Sobic001G012900 Sobic004G060300--Sobic001G012900 Sobic001G097900 Sobic001G097900 Sobic010G192600--Sobic001G097900 Sobic001G474400 Sobic001G474400 Sobic010G192600--Sobic001G474400 Sobic010G192600--Sobic001G358500 Sobic010G192600--Sobic007G118500 Sobic008G085700 Sobic008G085700 Sobic010G192600--Sobic008G085700 Sobic005G110499 Sobic005G110499 Sobic010G192600--Sobic005G110499 Sobic002G364900 Sobic002G364900 Sobic010G192600--Sobic002G364900 Sobic001G115700 Sobic001G115700 Sobic010G192600--Sobic001G115700 Sobic003G304400 Sobic003G304400 Sobic010G192600--Sobic003G304400 Sobic008G018500--Sobic001G358500 Sobic002G428100 Sobic002G428100 Sobic008G018500--Sobic002G428100 Sobic008G018500--Sobic007G208000 Sobic003G222700 Sobic003G222700 Sobic008G018500--Sobic003G222700 Sobic008G018500--Sobic004G084500 Sobic008G018500--Sobic001G389200 Sobic009G199500 Sobic009G199500 Sobic008G018500--Sobic009G199500 Sobic001G428800 Sobic001G428800 Sobic008G018500--Sobic001G428800 Sobic003G394200 Sobic003G394200 Sobic008G018500--Sobic003G394200 Sobic009G063800 Sobic009G063800 Sobic010G250000--Sobic009G063800 Sobic003G194300 Sobic003G194300 Sobic010G250000--Sobic003G194300 Sobic003G023200 Sobic003G023200 Sobic010G250000--Sobic003G023200 Sobic008G072500 Sobic008G072500 Sobic010G250000--Sobic008G072500 Sobic010G250000--Sobic010G192600 Sobic006G041800 Sobic006G041800 Sobic010G250000--Sobic006G041800 Sobic007G148400 Sobic007G148400 Sobic010G250000--Sobic007G148400 Sobic001G286100 Sobic001G286100 Sobic010G250000--Sobic001G286100 Sobic002G276800 Sobic002G276800 Sobic010G250000--Sobic002G276800 Sobic001G023100 Sobic001G023100 Sobic002G029300--Sobic001G023100 Sobic007G173700 Sobic007G173700 Sobic002G029300--Sobic007G173700 Sobic004G031800 Sobic004G031800 Sobic002G029300--Sobic004G031800 Sobic008G072200 Sobic008G072200 Sobic002G029300--Sobic008G072200 Sobic001G010700 Sobic001G010700 Sobic002G029300--Sobic001G010700 Sobic009G226400 Sobic009G226400 Sobic002G029300--Sobic009G226400 Sobic001G161700 Sobic001G161700 Sobic002G029300--Sobic001G161700 Sobic002G141700 Sobic002G141700 Sobic002G029300--Sobic002G141700 Sobic006G056200 Sobic006G056200 Sobic002G029300--Sobic006G056200 Sobic004G151200 Sobic004G151200 Sobic001G455000--Sobic004G151200 Sobic003G397900 Sobic003G397900 Sobic001G455000--Sobic003G397900 Sobic001G455000--Sobic007G118500 Sobic008G019532 Sobic008G019532 Sobic001G455000--Sobic008G019532 Sobic001G356100 Sobic001G356100 Sobic001G455000--Sobic001G356100 Sobic003G130900 Sobic003G130900 Sobic001G455000--Sobic003G130900 Sobic001G114200 Sobic001G114200 Sobic001G455000--Sobic001G114200 Sobic001G445500 Sobic001G445500 Sobic001G455000--Sobic001G445500 Sobic001G455000--Sobic003G394500 Sobic005G114500 Sobic005G114500 Sobic003G005900--Sobic005G114500 Sobic003G005900--Sobic003G130900 Sobic006G265600 Sobic006G265600 Sobic003G005900--Sobic006G265600 Sobic003G293000 Sobic003G293000 Sobic003G005900--Sobic003G293000 Sobic003G005900--Sobic001G474400 Sobic003G005900--Sobic004G151200 Sobic003G005900--Sobic001G012900 Sobic002G014800 Sobic002G014800 Sobic003G005900--Sobic002G014800 Sobic009G207200 Sobic009G207200 Sobic003G005900--Sobic009G207200 Sobic001G358500--Sobic001G428800 Sobic001G358500--Sobic010G192600 Sobic001G358500--Sobic008G018500 Sobic001G358500--Sobic008G085700 Sobic001G467100 Sobic001G467100 Sobic001G358500--Sobic001G467100 Sobic003G182300 Sobic003G182300 Sobic001G358500--Sobic003G182300 Sobic006G039400 Sobic006G039400 Sobic001G358500--Sobic006G039400 Sobic001G049400 Sobic001G049400 Sobic001G358500--Sobic001G049400 Sobic001G211900 Sobic001G211900 Sobic001G358500--Sobic001G211900 Sobic001G343000 Sobic001G343000 Sobic010G028400--Sobic001G343000 Sobic001G347700 Sobic001G347700 Sobic010G028400--Sobic001G347700 Sobic003G167000 Sobic003G167000 Sobic010G028400--Sobic003G167000 Sobic010G028400--Sobic007G208000 Sobic007G048700 Sobic007G048700 Sobic010G028400--Sobic007G048700 Sobic007G201000 Sobic007G201000 Sobic010G028400--Sobic007G201000 Sobic004G017900 Sobic004G017900 Sobic010G028400--Sobic004G017900 Sobic001G188000 Sobic001G188000 Sobic010G028400--Sobic001G188000 Sobic003G260600 Sobic003G260600 Sobic010G028400--Sobic003G260600
Octagon: transcription factors


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