Gene annotation
Transcriptome id Sobic.003G404100.1
Synonym Sb03g043980
Functional annotation CBS domain-containing protein, putative, expressed
UniProt C5XG98
Pfam PF00571
Panther DB PTHR13780 PTHR13780:SF46
NCBI CDD KOG1764; 5'-AMP-activated protein kinase, gamma subunit
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65320 : Cystathionine beta-synthase (CBS) family protein
RAP-DB (Rice) LOC_Os01g69090.1 : CBS domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026275
Brachypodium KQK11237
Barley HORVU3Hr1G094090.4 , HORVU3Hr1G094090.3 , HORVU3Hr1G094090.2 , HORVU3Hr1G094090.1
Wheat TraesCS3B02G463800 , TraesCS3B02G463400 , TraesCS3D02G422700 , TraesCS3A02G427100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G372200 AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K06276: 3-phosphoinositide dependent protein kinase-1
2 Sobic.006G222500 expressed protein -
3 Sobic.001G455000 glycosyl hydrolase, family 31, putative, expressed K05546: mannosyl-oligosaccharide alpha-1,3-glucosidase
4 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
5 Sobic.010G253400 AIG2-like family domain containing protein, expressed -
6 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
7 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
8 Sobic.010G065200 expressed protein -
9 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
10 Sobic.008G019532 - -
11 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
12 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
13 Sobic.004G186300 protein phosphotase protein, putative, expressed -
14 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
15 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
16 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
17 Sobic.008G018200 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
18 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
19 Sobic.003G302300 - -
20 Sobic.004G151200 RNA-binding protein-like, putative, expressed -


Gene co-expression network
sample Sobic003G404100 Sobic003G404100 Sobic003G372200 Sobic003G372200 Sobic003G404100--Sobic003G372200 Sobic006G222500 Sobic006G222500 Sobic003G404100--Sobic006G222500 Sobic001G455000 Sobic001G455000 Sobic003G404100--Sobic001G455000 Sobic001G309200 Sobic001G309200 Sobic003G404100--Sobic001G309200 Sobic010G253400 Sobic010G253400 Sobic003G404100--Sobic010G253400 Sobic001G356100 Sobic001G356100 Sobic003G404100--Sobic001G356100 Sobic003G260600 Sobic003G260600 Sobic003G404100--Sobic003G260600 Sobic010G065200 Sobic010G065200 Sobic003G404100--Sobic010G065200 Sobic001G114200 Sobic001G114200 Sobic003G404100--Sobic001G114200 Sobic001G378800 Sobic001G378800 Sobic003G372200--Sobic001G378800 Sobic004G284800 Sobic004G284800 Sobic003G372200--Sobic004G284800 Sobic003G201500 Sobic003G201500 Sobic003G372200--Sobic003G201500 Sobic003G372200--Sobic003G260600 Sobic003G089100 Sobic003G089100 Sobic003G372200--Sobic003G089100 Sobic002G420600 Sobic002G420600 Sobic003G372200--Sobic002G420600 Sobic002G167100 Sobic002G167100 Sobic003G372200--Sobic002G167100 Sobic006G232800 Sobic006G232800 Sobic003G372200--Sobic006G232800 Sobic002G362500 Sobic002G362500 Sobic003G372200--Sobic002G362500 Sobic007G148400 Sobic007G148400 Sobic006G222500--Sobic007G148400 Sobic004G186300 Sobic004G186300 Sobic006G222500--Sobic004G186300 Sobic007G146600 Sobic007G146600 Sobic006G222500--Sobic007G146600 Sobic006G222500--Sobic003G404100 Sobic003G270100 Sobic003G270100 Sobic006G222500--Sobic003G270100 Sobic007G218600 Sobic007G218600 Sobic006G222500--Sobic007G218600 Sobic001G193100 Sobic001G193100 Sobic006G222500--Sobic001G193100 Sobic002G419000 Sobic002G419000 Sobic006G222500--Sobic002G419000 Sobic003G308300 Sobic003G308300 Sobic006G222500--Sobic003G308300 Sobic004G151200 Sobic004G151200 Sobic001G455000--Sobic004G151200 Sobic003G397900 Sobic003G397900 Sobic001G455000--Sobic003G397900 Sobic007G118500 Sobic007G118500 Sobic001G455000--Sobic007G118500 Sobic008G019532 Sobic008G019532 Sobic001G455000--Sobic008G019532 Sobic001G455000--Sobic001G356100 Sobic003G130900 Sobic003G130900 Sobic001G455000--Sobic003G130900 Sobic001G455000--Sobic001G114200 Sobic001G445500 Sobic001G445500 Sobic001G455000--Sobic001G445500 Sobic003G394500 Sobic003G394500 Sobic001G455000--Sobic003G394500 Sobic002G348400 Sobic002G348400 Sobic001G309200--Sobic002G348400 Sobic001G188000 Sobic001G188000 Sobic001G309200--Sobic001G188000 Sobic001G309200--Sobic003G260600 Sobic001G117900 Sobic001G117900 Sobic001G309200--Sobic001G117900 Sobic009G066200 Sobic009G066200 Sobic001G309200--Sobic009G066200 Sobic002G308000 Sobic002G308000 Sobic001G309200--Sobic002G308000 Sobic002G392400 Sobic002G392400 Sobic001G309200--Sobic002G392400 Sobic010G153400 Sobic010G153400 Sobic001G309200--Sobic010G153400 Sobic007G086600 Sobic007G086600 Sobic001G309200--Sobic007G086600 Sobic008G141600 Sobic008G141600 Sobic010G253400--Sobic008G141600 Sobic001G408400 Sobic001G408400 Sobic010G253400--Sobic001G408400 Sobic004G074900 Sobic004G074900 Sobic010G253400--Sobic004G074900 Sobic002G368100 Sobic002G368100 Sobic010G253400--Sobic002G368100 Sobic010G253400--Sobic003G372200 Sobic010G253400--Sobic002G420600 Sobic003G040700 Sobic003G040700 Sobic010G253400--Sobic003G040700 Sobic005G145201 Sobic005G145201 Sobic010G253400--Sobic005G145201 Sobic001G490950 Sobic001G490950 Sobic010G253400--Sobic001G490950 Sobic004G263500 Sobic004G263500 Sobic001G356100--Sobic004G263500 Sobic001G356100--Sobic007G118500 Sobic001G356100--Sobic003G394500 Sobic001G356100--Sobic001G455000 Sobic001G356100--Sobic006G232800 Sobic006G060000 Sobic006G060000 Sobic001G356100--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic001G356100--Sobic004G350700 Sobic001G356100--Sobic001G114200 Sobic010G133400 Sobic010G133400 Sobic001G356100--Sobic010G133400 Sobic002G255400 Sobic002G255400 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic003G260600--Sobic001G378800 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic007G014700 Sobic007G014700 Sobic003G260600--Sobic007G014700 Sobic010G065200--Sobic001G378800 Sobic010G065200--Sobic003G372200 Sobic001G505600 Sobic001G505600 Sobic010G065200--Sobic001G505600 Sobic010G171000 Sobic010G171000 Sobic010G065200--Sobic010G171000 Sobic010G065200--Sobic010G133400 SobicK043400 SobicK043400 Sobic010G065200--SobicK043400 Sobic005G070400 Sobic005G070400 Sobic010G065200--Sobic005G070400 Sobic010G065200--Sobic006G232800 Sobic010G160300 Sobic010G160300 Sobic010G065200--Sobic010G160300 Sobic001G114200--Sobic004G350700 Sobic001G114200--Sobic006G060000 Sobic001G114200--Sobic010G160300 Sobic003G117800 Sobic003G117800 Sobic001G114200--Sobic003G117800 Sobic001G114200--Sobic003G394500 Sobic006G210700 Sobic006G210700 Sobic001G114200--Sobic006G210700 Sobic001G490900 Sobic001G490900 Sobic001G114200--Sobic001G490900 Sobic007G030100 Sobic007G030100 Sobic001G114200--Sobic007G030100 Sobic001G114200--Sobic007G218600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.