Gene annotation
Transcriptome id Sobic.006G222500.1
Synonym Sb06g029190
Functional annotation expressed protein
UniProt C5YG86
Pfam PF07145 PF14438
Panther DB PTHR12854 PTHR12854:SF12
NCBI CDD KOG1783; Small nuclear ribonucleoprotein F
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G54920 : -
RAP-DB (Rice) LOC_Os04g53450.1 : expressed protein
MaizeGDB (Corn) Zm00025a009703 , Zm00025a057076
Brachypodium KQJ84716
Barley HORVU2Hr1G106820.3 , HORVU2Hr1G106820.2 , HORVU2Hr1G106820.4 , HORVU2Hr1G106820.1 , HORVU2Hr1G106820.5
Wheat TraesCS2D02G472800 , TraesCS2A02G473100 , TraesCS2A02G473100
Populus -


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cDNA sequences
Sobic.006G222500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
2 Sobic.004G186300 protein phosphotase protein, putative, expressed -
3 Sobic.007G146600 conserved oligomeric Golgi complex component 3, putative, expressed -
4 Sobic.003G404100 CBS domain-containing protein, putative, expressed -
5 Sobic.003G270100 dehydrin family protein, expressed -
6 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
7 Sobic.001G193100 expressed protein -
8 Sobic.002G419000 AGC_AGC_other_RS6K_like.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K04688: ribosomal protein S6 kinase beta
9 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
10 Sobic.008G140400 diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
11 Sobic.006G210700 potassium transporter, putative, expressed -
12 Sobic.009G186700 TraB family protein, putative, expressed -
13 Sobic.010G171000 phospholipid-transporting ATPase 4, putative, expressed K01530: phospholipid-translocating ATPase
14 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
15 Sobic.001G050500 galactosyltransferase family protein, putative, expressed -
16 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
17 Sobic.001G122000 oxysterol-binding protein, putative, expressed -
18 Sobic.006G219900 csAtPR5, putative, expressed -
19 Sobic.001G305900 GTP binding protein, putative, expressed -
20 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic006G222500 Sobic006G222500 Sobic007G148400 Sobic007G148400 Sobic006G222500--Sobic007G148400 Sobic004G186300 Sobic004G186300 Sobic006G222500--Sobic004G186300 Sobic007G146600 Sobic007G146600 Sobic006G222500--Sobic007G146600 Sobic003G404100 Sobic003G404100 Sobic006G222500--Sobic003G404100 Sobic003G270100 Sobic003G270100 Sobic006G222500--Sobic003G270100 Sobic007G218600 Sobic007G218600 Sobic006G222500--Sobic007G218600 Sobic001G193100 Sobic001G193100 Sobic006G222500--Sobic001G193100 Sobic002G419000 Sobic002G419000 Sobic006G222500--Sobic002G419000 Sobic003G308300 Sobic003G308300 Sobic006G222500--Sobic003G308300 Sobic007G148400--Sobic007G218600 Sobic007G148400--Sobic003G308300 Sobic007G148400--Sobic006G222500 Sobic009G186700 Sobic009G186700 Sobic007G148400--Sobic009G186700 Sobic001G050500 Sobic001G050500 Sobic007G148400--Sobic001G050500 Sobic007G148400--Sobic007G146600 Sobic003G255700 Sobic003G255700 Sobic007G148400--Sobic003G255700 Sobic001G305900 Sobic001G305900 Sobic007G148400--Sobic001G305900 Sobic002G276800 Sobic002G276800 Sobic007G148400--Sobic002G276800 Sobic004G186300--Sobic006G222500 Sobic004G186300--Sobic003G270100 Sobic006G219900 Sobic006G219900 Sobic004G186300--Sobic006G219900 Sobic004G186300--Sobic003G308300 Sobic004G186300--Sobic007G148400 Sobic010G253400 Sobic010G253400 Sobic004G186300--Sobic010G253400 Sobic004G186300--Sobic007G218600 Sobic001G408400 Sobic001G408400 Sobic004G186300--Sobic001G408400 Sobic003G346500 Sobic003G346500 Sobic004G186300--Sobic003G346500 Sobic007G146600--Sobic007G148400 Sobic001G343000 Sobic001G343000 Sobic007G146600--Sobic001G343000 Sobic007G146600--Sobic006G222500 Sobic009G063800 Sobic009G063800 Sobic007G146600--Sobic009G063800 Sobic002G182000 Sobic002G182000 Sobic007G146600--Sobic002G182000 Sobic003G150900 Sobic003G150900 Sobic007G146600--Sobic003G150900 Sobic003G393200 Sobic003G393200 Sobic007G146600--Sobic003G393200 Sobic005G114800 Sobic005G114800 Sobic007G146600--Sobic005G114800 Sobic010G250000 Sobic010G250000 Sobic007G146600--Sobic010G250000 Sobic003G372200 Sobic003G372200 Sobic003G404100--Sobic003G372200 Sobic003G404100--Sobic006G222500 Sobic001G455000 Sobic001G455000 Sobic003G404100--Sobic001G455000 Sobic001G309200 Sobic001G309200 Sobic003G404100--Sobic001G309200 Sobic003G404100--Sobic010G253400 Sobic001G356100 Sobic001G356100 Sobic003G404100--Sobic001G356100 Sobic003G260600 Sobic003G260600 Sobic003G404100--Sobic003G260600 Sobic010G065200 Sobic010G065200 Sobic003G404100--Sobic010G065200 Sobic001G114200 Sobic001G114200 Sobic003G404100--Sobic001G114200 Sobic001G203800 Sobic001G203800 Sobic003G270100--Sobic001G203800 Sobic003G270100--Sobic003G308300 Sobic003G270100--Sobic003G255700 Sobic003G270100--Sobic001G050500 Sobic003G270100--Sobic004G186300 Sobic006G100266 Sobic006G100266 Sobic003G270100--Sobic006G100266 Sobic004G328100 Sobic004G328100 Sobic003G270100--Sobic004G328100 Sobic003G270100--Sobic001G305900 Sobic006G208200 Sobic006G208200 Sobic003G270100--Sobic006G208200 Sobic007G218600--Sobic009G186700 Sobic007G218600--Sobic001G305900 Sobic007G218600--Sobic007G148400 Sobic007G218600--Sobic003G255700 Sobic001G280500 Sobic001G280500 Sobic007G218600--Sobic001G280500 Sobic007G218600--Sobic003G308300 Sobic007G218600--Sobic001G114200 Sobic010G181600 Sobic010G181600 Sobic007G218600--Sobic010G181600 Sobic010G160300 Sobic010G160300 Sobic007G218600--Sobic010G160300 Sobic010G223400 Sobic010G223400 Sobic001G193100--Sobic010G223400 Sobic003G394200 Sobic003G394200 Sobic001G193100--Sobic003G394200 Sobic001G012900 Sobic001G012900 Sobic001G193100--Sobic001G012900 Sobic001G061200 Sobic001G061200 Sobic001G193100--Sobic001G061200 Sobic007G173700 Sobic007G173700 Sobic001G193100--Sobic007G173700 Sobic004G084500 Sobic004G084500 Sobic001G193100--Sobic004G084500 Sobic004G060300 Sobic004G060300 Sobic001G193100--Sobic004G060300 Sobic004G078700 Sobic004G078700 Sobic001G193100--Sobic004G078700 Sobic010G074900 Sobic010G074900 Sobic001G193100--Sobic010G074900 Sobic002G419000--Sobic006G222500 Sobic002G313900 Sobic002G313900 Sobic002G419000--Sobic002G313900 Sobic008G140400 Sobic008G140400 Sobic002G419000--Sobic008G140400 Sobic004G039300 Sobic004G039300 Sobic002G419000--Sobic004G039300 Sobic001G005600 Sobic001G005600 Sobic002G419000--Sobic001G005600 Sobic009G160600 Sobic009G160600 Sobic002G419000--Sobic009G160600 Sobic008G021000 Sobic008G021000 Sobic002G419000--Sobic008G021000 Sobic002G419000--Sobic007G148400 Sobic001G122000 Sobic001G122000 Sobic002G419000--Sobic001G122000 Sobic003G308300--Sobic003G255700 Sobic008G013200 Sobic008G013200 Sobic003G308300--Sobic008G013200 Sobic003G308300--Sobic009G186700 Sobic003G308300--Sobic007G148400 Sobic003G308300--Sobic007G218600 Sobic003G308300--Sobic001G305900 Sobic003G308300--Sobic004G328100 Sobic003G308300--Sobic006G100266 Sobic003G308300--Sobic003G270100
Octagon: transcription factors


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