Gene annotation
Transcriptome id Sobic.007G173700.3,Sobic.007G173700.1
Synonym Sb07g024580
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5YNB8
Pfam PF00400
Panther DB PTHR14205 PTHR14205:SF15
NCBI CDD KOG1007; WD repeat protein TSSC1, WD repeat superfamily
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G20540 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os08g44010.5 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a031265 , Zm00025a005653
Brachypodium KQJ99315
Barley -
Wheat TraesCS7D02G276000 , TraesCS7D02G276000 , TraesCS7A02G276100 , TraesCS7A02G276100 , TraesCS7B02G173900
Populus -


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cDNA sequences
Sobic.007G173700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
2 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
3 Sobic.001G023100 ACBP4, putative, expressed -
4 Sobic.001G193100 expressed protein -
5 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
6 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
7 Sobic.002G141700 unc-50, putative, expressed -
8 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
9 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
10 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
11 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
12 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
13 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
14 Sobic.008G140400 diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
15 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
16 Sobic.003G261800 expressed protein -
17 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
18 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
19 Sobic.002G301100 PQ loop repeat domain containing protein, expressed K09660: mannose-P-dolichol utilization defect 1
20 Sobic.001G077900 SSA2 - 2S albumin seed storage family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic007G173700 Sobic007G173700 Sobic002G029300 Sobic002G029300 Sobic007G173700--Sobic002G029300 Sobic004G000100 Sobic004G000100 Sobic007G173700--Sobic004G000100 Sobic001G023100 Sobic001G023100 Sobic007G173700--Sobic001G023100 Sobic001G193100 Sobic001G193100 Sobic007G173700--Sobic001G193100 Sobic001G161700 Sobic001G161700 Sobic007G173700--Sobic001G161700 Sobic001G061200 Sobic001G061200 Sobic007G173700--Sobic001G061200 Sobic002G141700 Sobic002G141700 Sobic007G173700--Sobic002G141700 Sobic001G049400 Sobic001G049400 Sobic007G173700--Sobic001G049400 Sobic003G394200 Sobic003G394200 Sobic007G173700--Sobic003G394200 Sobic002G029300--Sobic001G023100 Sobic002G029300--Sobic007G173700 Sobic004G031800 Sobic004G031800 Sobic002G029300--Sobic004G031800 Sobic008G072200 Sobic008G072200 Sobic002G029300--Sobic008G072200 Sobic001G010700 Sobic001G010700 Sobic002G029300--Sobic001G010700 Sobic009G226400 Sobic009G226400 Sobic002G029300--Sobic009G226400 Sobic002G029300--Sobic001G161700 Sobic002G029300--Sobic002G141700 Sobic006G056200 Sobic006G056200 Sobic002G029300--Sobic006G056200 Sobic004G000100--Sobic007G173700 Sobic001G443200 Sobic001G443200 Sobic004G000100--Sobic001G443200 Sobic001G465400 Sobic001G465400 Sobic004G000100--Sobic001G465400 Sobic004G000100--Sobic001G161700 Sobic008G102600 Sobic008G102600 Sobic004G000100--Sobic008G102600 Sobic004G347600 Sobic004G347600 Sobic004G000100--Sobic004G347600 Sobic001G077900 Sobic001G077900 Sobic004G000100--Sobic001G077900 Sobic004G000100--Sobic001G023100 Sobic004G000100--Sobic002G029300 Sobic001G023100--Sobic002G029300 Sobic001G023100--Sobic007G173700 Sobic001G023100--Sobic009G226400 Sobic008G055900 Sobic008G055900 Sobic001G023100--Sobic008G055900 Sobic001G023100--Sobic001G161700 Sobic001G023100--Sobic008G072200 Sobic001G023100--Sobic001G193100 Sobic003G270600 Sobic003G270600 Sobic001G023100--Sobic003G270600 Sobic008G085700 Sobic008G085700 Sobic001G023100--Sobic008G085700 Sobic010G223400 Sobic010G223400 Sobic001G193100--Sobic010G223400 Sobic001G193100--Sobic003G394200 Sobic001G012900 Sobic001G012900 Sobic001G193100--Sobic001G012900 Sobic001G193100--Sobic001G061200 Sobic001G193100--Sobic007G173700 Sobic004G084500 Sobic004G084500 Sobic001G193100--Sobic004G084500 Sobic004G060300 Sobic004G060300 Sobic001G193100--Sobic004G060300 Sobic004G078700 Sobic004G078700 Sobic001G193100--Sobic004G078700 Sobic010G074900 Sobic010G074900 Sobic001G193100--Sobic010G074900 Sobic002G070600 Sobic002G070600 Sobic001G161700--Sobic002G070600 Sobic001G161700--Sobic008G072200 Sobic001G490500 Sobic001G490500 Sobic001G161700--Sobic001G490500 Sobic001G161700--Sobic001G012900 Sobic001G161700--Sobic001G023100 Sobic003G346400 Sobic003G346400 Sobic001G161700--Sobic003G346400 Sobic001G161700--Sobic004G000100 Sobic004G254800 Sobic004G254800 Sobic001G161700--Sobic004G254800 Sobic001G161700--Sobic008G085700 Sobic001G061200--Sobic001G193100 Sobic001G061200--Sobic007G173700 Sobic003G222700 Sobic003G222700 Sobic001G061200--Sobic003G222700 Sobic009G207200 Sobic009G207200 Sobic001G061200--Sobic009G207200 Sobic008G129600 Sobic008G129600 Sobic001G061200--Sobic008G129600 Sobic002G276800 Sobic002G276800 Sobic001G061200--Sobic002G276800 Sobic001G061200--Sobic002G029300 Sobic003G148900 Sobic003G148900 Sobic001G061200--Sobic003G148900 Sobic001G061200--Sobic001G023100 Sobic003G261800 Sobic003G261800 Sobic002G141700--Sobic003G261800 Sobic002G141700--Sobic001G443200 Sobic002G141700--Sobic001G077900 Sobic002G087000 Sobic002G087000 Sobic002G141700--Sobic002G087000 Sobic001G220900 Sobic001G220900 Sobic002G141700--Sobic001G220900 Sobic002G141700--Sobic007G173700 Sobic002G141700--Sobic002G029300 Sobic003G134800 Sobic003G134800 Sobic002G141700--Sobic003G134800 Sobic001G542900 Sobic001G542900 Sobic002G141700--Sobic001G542900 Sobic010G020400 Sobic010G020400 Sobic001G049400--Sobic010G020400 Sobic001G049400--Sobic001G465400 Sobic001G049400--Sobic008G085700 Sobic001G049400--Sobic004G078700 Sobic001G211900 Sobic001G211900 Sobic001G049400--Sobic001G211900 Sobic003G302200 Sobic003G302200 Sobic001G049400--Sobic003G302200 Sobic001G049400--Sobic008G055900 Sobic003G338500 Sobic003G338500 Sobic001G049400--Sobic003G338500 Sobic001G049400--Sobic007G173700 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic006G128100 Sobic006G128100 Sobic003G394200--Sobic006G128100 Sobic003G394200--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G394200--Sobic003G270600 Sobic003G189600 Sobic003G189600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000
Octagon: transcription factors


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