Gene annotation
Transcriptome id Sobic.006G056200.2,Sobic.006G056200.5,Sobic.006G056200.4
Synonym
Functional annotation transport protein particle component, Bet3, domain containing protein, expressed
UniProt C6JSG4 , A0A1B6PKD9
Pfam PF04051
Panther DB PTHR12817
NCBI CDD KOG3316; Transport protein particle (TRAPP) complex subunit
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05000 : Transport protein particle (TRAPP) component
RAP-DB (Rice) LOC_Os09g06970.1 : transport protein particle component, Bet3, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011692 , Zm00025a055937
Brachypodium -
Barley HORVU5Hr1G051790.10 , HORVU5Hr1G051790.9 , HORVU5Hr1G051790.8 , HORVU5Hr1G051790.1 , HORVU5Hr1G051790.3 , HORVU5Hr1G051790.2 , HORVU5Hr1G051790.5 , HORVU5Hr1G051790.4 , HORVU5Hr1G051790.7
Wheat TraesCS5B02G164200 , TraesCS5A02G167200 , TraesCS5D02G171500
Populus -


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cDNA sequences
Sobic.006G056200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
2 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
3 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
4 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
5 Sobic.009G226400 dynamin family protein, putative, expressed -
6 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
7 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
8 Sobic.K004100 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
10 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
11 Sobic.010G269100 zinc finger family protein, putative, expressed -
12 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
13 Sobic.003G227100 adaptin, putative, expressed -
14 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
16 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
17 Sobic.007G132100 myrosinase precursor, putative, expressed -
18 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
19 Sobic.002G111600 expressed protein -
20 Sobic.001G023100 ACBP4, putative, expressed -


Gene co-expression network
sample Sobic006G056200 Sobic006G056200 Sobic004G039600 Sobic004G039600 Sobic006G056200--Sobic004G039600 Sobic008G055900 Sobic008G055900 Sobic006G056200--Sobic008G055900 Sobic008G129600 Sobic008G129600 Sobic006G056200--Sobic008G129600 Sobic003G099300 Sobic003G099300 Sobic006G056200--Sobic003G099300 Sobic009G226400 Sobic009G226400 Sobic006G056200--Sobic009G226400 Sobic008G103300 Sobic008G103300 Sobic006G056200--Sobic008G103300 Sobic001G369000 Sobic001G369000 Sobic006G056200--Sobic001G369000 SobicK004100 SobicK004100 Sobic006G056200--SobicK004100 Sobic002G029300 Sobic002G029300 Sobic006G056200--Sobic002G029300 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic002G020700 Sobic002G020700 Sobic008G055900--Sobic002G020700 Sobic010G223300 Sobic010G223300 Sobic008G055900--Sobic010G223300 Sobic008G055900--Sobic008G103300 Sobic010G020400 Sobic010G020400 Sobic008G055900--Sobic010G020400 Sobic006G136400 Sobic006G136400 Sobic008G055900--Sobic006G136400 Sobic001G447300 Sobic001G447300 Sobic008G055900--Sobic001G447300 Sobic008G085700 Sobic008G085700 Sobic008G055900--Sobic008G085700 Sobic008G055900--Sobic006G056200 Sobic008G055900--Sobic008G129600 Sobic008G129600--Sobic008G055900 Sobic007G177300 Sobic007G177300 Sobic008G129600--Sobic007G177300 Sobic008G129600--Sobic006G056200 Sobic008G129600--Sobic008G103300 Sobic010G264000 Sobic010G264000 Sobic008G129600--Sobic010G264000 Sobic001G467100 Sobic001G467100 Sobic008G129600--Sobic001G467100 Sobic001G449900 Sobic001G449900 Sobic008G129600--Sobic001G449900 Sobic003G182300 Sobic003G182300 Sobic008G129600--Sobic003G182300 Sobic006G270600 Sobic006G270600 Sobic008G129600--Sobic006G270600 Sobic010G269100 Sobic010G269100 Sobic003G099300--Sobic010G269100 Sobic003G099300--Sobic004G039600 Sobic005G216300 Sobic005G216300 Sobic003G099300--Sobic005G216300 Sobic003G099300--SobicK004100 Sobic003G099300--Sobic001G369000 Sobic005G115500 Sobic005G115500 Sobic003G099300--Sobic005G115500 Sobic002G256200 Sobic002G256200 Sobic003G099300--Sobic002G256200 Sobic003G099300--Sobic006G056200 Sobic009G231700 Sobic009G231700 Sobic003G099300--Sobic009G231700 Sobic001G023100 Sobic001G023100 Sobic009G226400--Sobic001G023100 Sobic003G270600 Sobic003G270600 Sobic009G226400--Sobic003G270600 Sobic009G226400--SobicK004100 Sobic009G226400--Sobic001G369000 Sobic009G226400--Sobic002G029300 Sobic001G335900 Sobic001G335900 Sobic009G226400--Sobic001G335900 Sobic009G226400--Sobic006G056200 Sobic009G226400--Sobic004G039600 Sobic001G420800 Sobic001G420800 Sobic009G226400--Sobic001G420800 Sobic008G103300--Sobic008G055900 Sobic002G371700 Sobic002G371700 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic009G049400 Sobic009G049400 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 SobicK004100--Sobic001G369000 SobicK004100--Sobic004G039600 SobicK004100--Sobic003G099300 SobicK004100--Sobic001G335900 SobicK004100--Sobic007G120500 SobicK004100--Sobic009G049400 SobicK004100--Sobic003G240700 SobicK004100--Sobic009G226400 SobicK004100--Sobic001G449900 Sobic002G029300--Sobic001G023100 Sobic007G173700 Sobic007G173700 Sobic002G029300--Sobic007G173700 Sobic004G031800 Sobic004G031800 Sobic002G029300--Sobic004G031800 Sobic008G072200 Sobic008G072200 Sobic002G029300--Sobic008G072200 Sobic001G010700 Sobic001G010700 Sobic002G029300--Sobic001G010700 Sobic002G029300--Sobic009G226400 Sobic001G161700 Sobic001G161700 Sobic002G029300--Sobic001G161700 Sobic002G141700 Sobic002G141700 Sobic002G029300--Sobic002G141700 Sobic002G029300--Sobic006G056200
Octagon: transcription factors


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