Gene annotation
Transcriptome id Sobic.K004100.1
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C6JS79 , A0A109NDB7
Pfam -
Panther DB PTHR12981 PTHR12981:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G14835 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os10g20600.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003937
Brachypodium PNT67334
Barley HORVU1Hr1G030480.8 , HORVU1Hr1G030480.2 , HORVU1Hr1G030480.4 , HORVU1Hr1G030480.5 , HORVU1Hr1G030480.6 , HORVU1Hr1G030480.7 , HORVU1Hr1G030480.1 , HORVU1Hr1G030480.3
Wheat TraesCS1B02G146000 , TraesCS1A02G129200 , TraesCS1D02G125500 , TraesCS1D02G125500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
2 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
3 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
4 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
5 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
6 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
7 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
8 Sobic.009G226400 dynamin family protein, putative, expressed -
9 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
10 Sobic.004G057100 tubulin-specific chaperone E, putative, expressed -
11 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
12 Sobic.003G187200 phox domain-containing protein, putative, expressed -
13 Sobic.004G286500 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
14 Sobic.001G012900 brefeldin A-sensitive Golgi protein-like, putative, expressed -
15 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
16 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
17 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
18 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
19 Sobic.008G085700 exocyst complex component 5, putative, expressed -
20 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -


Gene co-expression network
sample SobicK004100 SobicK004100 Sobic001G369000 Sobic001G369000 SobicK004100--Sobic001G369000 Sobic004G039600 Sobic004G039600 SobicK004100--Sobic004G039600 Sobic003G099300 Sobic003G099300 SobicK004100--Sobic003G099300 Sobic001G335900 Sobic001G335900 SobicK004100--Sobic001G335900 Sobic007G120500 Sobic007G120500 SobicK004100--Sobic007G120500 Sobic009G049400 Sobic009G049400 SobicK004100--Sobic009G049400 Sobic003G240700 Sobic003G240700 SobicK004100--Sobic003G240700 Sobic009G226400 Sobic009G226400 SobicK004100--Sobic009G226400 Sobic001G449900 Sobic001G449900 SobicK004100--Sobic001G449900 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic004G039600--Sobic007G120500 Sobic010G269100 Sobic010G269100 Sobic003G099300--Sobic010G269100 Sobic003G099300--Sobic004G039600 Sobic005G216300 Sobic005G216300 Sobic003G099300--Sobic005G216300 Sobic003G099300--SobicK004100 Sobic003G099300--Sobic001G369000 Sobic005G115500 Sobic005G115500 Sobic003G099300--Sobic005G115500 Sobic002G256200 Sobic002G256200 Sobic003G099300--Sobic002G256200 Sobic006G056200 Sobic006G056200 Sobic003G099300--Sobic006G056200 Sobic009G231700 Sobic009G231700 Sobic003G099300--Sobic009G231700 Sobic001G335900--Sobic001G369000 Sobic001G335900--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G335900--Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G335900--Sobic001G170100 Sobic001G335900--Sobic003G240700 Sobic001G335900--Sobic009G229600 Sobic001G335900--Sobic009G049400 Sobic001G335900--Sobic007G120500 Sobic001G335900--SobicK004100 Sobic007G120500--Sobic001G369000 Sobic007G120500--Sobic004G039600 Sobic007G120500--Sobic007G132100 Sobic007G120500--Sobic006G012500 Sobic003G057700 Sobic003G057700 Sobic007G120500--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic007G120500--Sobic003G249600 Sobic004G072100 Sobic004G072100 Sobic007G120500--Sobic004G072100 Sobic007G120500--Sobic010G053800 Sobic003G394200 Sobic003G394200 Sobic007G120500--Sobic003G394200 Sobic009G049400--Sobic001G369000 Sobic009G049400--Sobic009G229600 Sobic009G049400--Sobic001G426600 Sobic009G049400--Sobic003G394200 Sobic009G049400--Sobic001G335900 Sobic009G049400--Sobic006G163800 Sobic003G189600 Sobic003G189600 Sobic009G049400--Sobic003G189600 Sobic009G049400--Sobic004G039600 Sobic009G049400--Sobic003G240700 Sobic003G240700--Sobic001G369000 Sobic003G240700--Sobic001G335900 Sobic003G240700--Sobic001G170100 Sobic003G240700--Sobic006G138000 Sobic003G314700 Sobic003G314700 Sobic003G240700--Sobic003G314700 Sobic003G293000 Sobic003G293000 Sobic003G240700--Sobic003G293000 Sobic003G240700--Sobic009G049400 Sobic003G240700--Sobic001G426600 Sobic003G227100 Sobic003G227100 Sobic003G240700--Sobic003G227100 Sobic001G023100 Sobic001G023100 Sobic009G226400--Sobic001G023100 Sobic003G270600 Sobic003G270600 Sobic009G226400--Sobic003G270600 Sobic009G226400--SobicK004100 Sobic009G226400--Sobic001G369000 Sobic002G029300 Sobic002G029300 Sobic009G226400--Sobic002G029300 Sobic009G226400--Sobic001G335900 Sobic009G226400--Sobic006G056200 Sobic009G226400--Sobic004G039600 Sobic001G420800 Sobic001G420800 Sobic009G226400--Sobic001G420800 Sobic010G223300 Sobic010G223300 Sobic001G449900--Sobic010G223300 Sobic002G020700 Sobic002G020700 Sobic001G449900--Sobic002G020700 Sobic008G085700 Sobic008G085700 Sobic001G449900--Sobic008G085700 Sobic001G301200 Sobic001G301200 Sobic001G449900--Sobic001G301200 Sobic001G449900--Sobic003G189600 Sobic001G428800 Sobic001G428800 Sobic001G449900--Sobic001G428800 Sobic003G029600 Sobic003G029600 Sobic001G449900--Sobic003G029600 Sobic010G020400 Sobic010G020400 Sobic001G449900--Sobic010G020400 Sobic007G005500 Sobic007G005500 Sobic001G449900--Sobic007G005500
Octagon: transcription factors


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