Gene annotation
Transcriptome id Sobic.004G057100.1
Synonym PFI, TFCE, Sb04g004790
Functional annotation tubulin-specific chaperone E, putative, expressed
UniProt C5XW49
Pfam PF01302
Panther DB PTHR15140 PTHR15140:SF6
NCBI CDD KOG2982; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71440 : tubulin folding cofactor E / Pfifferling (PFI)
RAP-DB (Rice) LOC_Os05g01500.1 : tubulin-specific chaperone E, putative, expressed
MaizeGDB (Corn) Zm00025a019097
Brachypodium KQK08119
Barley HORVU1Hr1G001890.26 , HORVU1Hr1G001890.24 , HORVU1Hr1G001890.25 , HORVU1Hr1G001890.22 , HORVU1Hr1G001890.23 , HORVU1Hr1G001890.20 , HORVU1Hr1G001890.21 , HORVU1Hr1G001890.17 , HORVU1Hr1G001890.15 , HORVU1Hr1G001890.14 , HORVU1Hr1G001890.13 , HORVU1Hr1G001890.11 , HORVU1Hr1G001890.10 , HORVU1Hr1G001890.19 , HORVU1Hr1G001890.18 , HORVU1Hr1G001890.9 , HORVU1Hr1G001890.8 , HORVU1Hr1G001890.7 , HORVU1Hr1G001890.6 , HORVU1Hr1G001890.5 , HORVU1Hr1G001890.4 , HORVU1Hr1G001890.3 , HORVU1Hr1G001890.2 , HORVU1Hr1G001890.1
Wheat TraesCS1A02G015200 , TraesCS1A02G015200 , TraesCS1B02G019200 , TraesCS1B02G019200 , TraesCS1B02G019200 , TraesCS1B02G019200 , TraesCS1D02G013100 , TraesCS1D02G013100 , TraesCS1D02G013100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G057100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.K004100 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
3 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
4 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
5 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
6 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
7 Sobic.010G099800 growth regulator related protein, putative, expressed -
8 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
9 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
10 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
11 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
12 Sobic.002G143000 ubiquitin family protein, putative, expressed -
13 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
14 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
15 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
16 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
17 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
18 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
19 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
20 Sobic.010G269100 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic004G057100 Sobic004G057100 SobicK004100 SobicK004100 Sobic004G057100--SobicK004100 Sobic004G326600 Sobic004G326600 Sobic004G057100--Sobic004G326600 Sobic001G460500 Sobic001G460500 Sobic004G057100--Sobic001G460500 Sobic001G168900 Sobic001G168900 Sobic004G057100--Sobic001G168900 Sobic001G527300 Sobic001G527300 Sobic004G057100--Sobic001G527300 Sobic005G163700 Sobic005G163700 Sobic004G057100--Sobic005G163700 Sobic010G099800 Sobic010G099800 Sobic004G057100--Sobic010G099800 Sobic005G115500 Sobic005G115500 Sobic004G057100--Sobic005G115500 Sobic003G099300 Sobic003G099300 Sobic004G057100--Sobic003G099300 Sobic001G369000 Sobic001G369000 SobicK004100--Sobic001G369000 Sobic004G039600 Sobic004G039600 SobicK004100--Sobic004G039600 SobicK004100--Sobic003G099300 Sobic001G335900 Sobic001G335900 SobicK004100--Sobic001G335900 Sobic007G120500 Sobic007G120500 SobicK004100--Sobic007G120500 Sobic009G049400 Sobic009G049400 SobicK004100--Sobic009G049400 Sobic003G240700 Sobic003G240700 SobicK004100--Sobic003G240700 Sobic009G226400 Sobic009G226400 SobicK004100--Sobic009G226400 Sobic001G449900 Sobic001G449900 SobicK004100--Sobic001G449900 Sobic004G047200 Sobic004G047200 Sobic004G326600--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic004G326600--Sobic002G014400 Sobic002G423500 Sobic002G423500 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic002G341800 Sobic002G341800 Sobic004G326600--Sobic002G341800 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic001G460500--Sobic002G014400 Sobic004G208500 Sobic004G208500 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic001G460500--Sobic003G099300 Sobic007G187600 Sobic007G187600 Sobic001G168900--Sobic007G187600 Sobic004G307500 Sobic004G307500 Sobic001G168900--Sobic004G307500 Sobic002G077900 Sobic002G077900 Sobic001G168900--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic001G168900--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic001G168900--Sobic009G258400 Sobic001G042200 Sobic001G042200 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic003G132000 Sobic003G132000 Sobic001G168900--Sobic003G132000 Sobic004G156800 Sobic004G156800 Sobic001G527300--Sobic004G156800 Sobic008G147200 Sobic008G147200 Sobic001G527300--Sobic008G147200 Sobic009G143800 Sobic009G143800 Sobic001G527300--Sobic009G143800 Sobic001G527300--Sobic001G291800 Sobic010G247400 Sobic010G247400 Sobic001G527300--Sobic010G247400 Sobic010G007100 Sobic010G007100 Sobic001G527300--Sobic010G007100 Sobic006G226300 Sobic006G226300 Sobic001G527300--Sobic006G226300 Sobic001G527300--Sobic001G168900 Sobic004G340400 Sobic004G340400 Sobic001G527300--Sobic004G340400 Sobic005G163700--Sobic001G460500 Sobic005G163700--Sobic002G423500 Sobic005G163700--Sobic002G014400 Sobic005G163700--Sobic004G047200 Sobic005G163700--Sobic004G215700 Sobic005G163700--Sobic004G326600 Sobic001G467100 Sobic001G467100 Sobic005G163700--Sobic001G467100 Sobic005G163700--Sobic004G208500 Sobic005G163700--Sobic002G412700 Sobic001G393700 Sobic001G393700 Sobic010G099800--Sobic001G393700 Sobic010G099800--Sobic003G240700 Sobic001G474400 Sobic001G474400 Sobic010G099800--Sobic001G474400 Sobic009G045200 Sobic009G045200 Sobic010G099800--Sobic009G045200 Sobic003G405500 Sobic003G405500 Sobic010G099800--Sobic003G405500 Sobic010G278600 Sobic010G278600 Sobic010G099800--Sobic010G278600 Sobic010G099800--Sobic001G335900 Sobic001G051700 Sobic001G051700 Sobic010G099800--Sobic001G051700 Sobic002G430300 Sobic002G430300 Sobic010G099800--Sobic002G430300 Sobic005G115500--Sobic001G291800 Sobic001G145400 Sobic001G145400 Sobic005G115500--Sobic001G145400 Sobic001G248100 Sobic001G248100 Sobic005G115500--Sobic001G248100 Sobic002G145800 Sobic002G145800 Sobic005G115500--Sobic002G145800 Sobic005G115500--Sobic003G099300 Sobic007G183300 Sobic007G183300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic005G115500--Sobic002G430300 Sobic005G115500--Sobic001G051700 Sobic010G269100 Sobic010G269100 Sobic003G099300--Sobic010G269100 Sobic003G099300--Sobic004G039600 Sobic005G216300 Sobic005G216300 Sobic003G099300--Sobic005G216300 Sobic003G099300--SobicK004100 Sobic003G099300--Sobic001G369000 Sobic003G099300--Sobic005G115500 Sobic002G256200 Sobic002G256200 Sobic003G099300--Sobic002G256200 Sobic006G056200 Sobic006G056200 Sobic003G099300--Sobic006G056200 Sobic009G231700 Sobic009G231700 Sobic003G099300--Sobic009G231700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.