Gene annotation
Transcriptome id Sobic.002G143000.1
Synonym Sb02g013170
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5X6S9
Pfam PF10260
Panther DB PTHR13527 PTHR13527:SF0
NCBI CDD KOG3249; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G35360 : ubiquitin family protein
RAP-DB (Rice) LOC_Os09g39980.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a045931
Brachypodium -
Barley HORVU5Hr1G062010.1 , HORVU5Hr1G062010.2 , HORVU5Hr1G062010.3 , HORVU5Hr1G062010.4
Wheat TraesCS5D02G217800 , TraesCS5B02G209600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
2 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
3 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
4 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
5 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
6 Sobic.005G105500 expressed protein -
7 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
8 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
9 Sobic.002G268400 expressed protein -
10 Sobic.004G057100 tubulin-specific chaperone E, putative, expressed -
11 Sobic.010G269100 zinc finger family protein, putative, expressed -
12 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
13 Sobic.003G261500 lipase, putative, expressed -
14 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
15 Sobic.001G057200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
16 Sobic.010G146600 cyclin-dependent kinase F-1, putative, expressed -
17 Sobic.003G261400 DUF292 domain containing protein, expressed -
18 Sobic.001G201500 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
19 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
20 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -


Gene co-expression network
sample Sobic002G143000 Sobic002G143000 Sobic010G057900 Sobic010G057900 Sobic002G143000--Sobic010G057900 Sobic001G458700 Sobic001G458700 Sobic002G143000--Sobic001G458700 Sobic004G326600 Sobic004G326600 Sobic002G143000--Sobic004G326600 Sobic004G081800 Sobic004G081800 Sobic002G143000--Sobic004G081800 Sobic002G341800 Sobic002G341800 Sobic002G143000--Sobic002G341800 Sobic005G105500 Sobic005G105500 Sobic002G143000--Sobic005G105500 Sobic006G056600 Sobic006G056600 Sobic002G143000--Sobic006G056600 Sobic001G091900 Sobic001G091900 Sobic002G143000--Sobic001G091900 Sobic002G268400 Sobic002G268400 Sobic002G143000--Sobic002G268400 Sobic010G057900--Sobic002G268400 Sobic006G101700 Sobic006G101700 Sobic010G057900--Sobic006G101700 Sobic010G057900--Sobic002G143000 Sobic001G078800 Sobic001G078800 Sobic010G057900--Sobic001G078800 Sobic003G314100 Sobic003G314100 Sobic010G057900--Sobic003G314100 Sobic009G192000 Sobic009G192000 Sobic010G057900--Sobic009G192000 Sobic010G205300 Sobic010G205300 Sobic010G057900--Sobic010G205300 Sobic010G057900--Sobic001G458700 Sobic004G356900 Sobic004G356900 Sobic010G057900--Sobic004G356900 Sobic007G176200 Sobic007G176200 Sobic001G458700--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic001G458700--Sobic002G341800 Sobic004G224900 Sobic004G224900 Sobic001G458700--Sobic004G224900 Sobic003G330500 Sobic003G330500 Sobic001G458700--Sobic003G330500 Sobic001G283200 Sobic001G283200 Sobic001G458700--Sobic001G283200 Sobic001G502200 Sobic001G502200 Sobic001G458700--Sobic001G502200 Sobic001G458700--Sobic004G081800 Sobic004G047200 Sobic004G047200 Sobic004G326600--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic004G326600--Sobic002G014400 Sobic002G423500 Sobic002G423500 Sobic004G326600--Sobic002G423500 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic004G326600--Sobic002G341800 Sobic005G163700 Sobic005G163700 Sobic004G326600--Sobic005G163700 Sobic004G326600--Sobic002G143000 Sobic004G326600--Sobic001G458700 Sobic004G081800--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic004G081800--Sobic003G261400 Sobic004G081800--Sobic002G341800 Sobic004G081800--Sobic004G224900 Sobic004G081800--Sobic007G176200 Sobic004G081800--Sobic001G502200 Sobic004G081800--Sobic001G010700 Sobic007G168600 Sobic007G168600 Sobic004G081800--Sobic007G168600 Sobic004G081800--Sobic006G252200 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic002G341800--Sobic004G081800 Sobic001G281900 Sobic001G281900 Sobic005G105500--Sobic001G281900 Sobic005G105500--Sobic001G458700 Sobic005G105500--Sobic002G341800 Sobic001G145500 Sobic001G145500 Sobic005G105500--Sobic001G145500 Sobic001G096100 Sobic001G096100 Sobic005G105500--Sobic001G096100 Sobic006G211800 Sobic006G211800 Sobic005G105500--Sobic006G211800 Sobic005G105500--Sobic007G176200 Sobic005G105500--Sobic003G330500 Sobic006G002201 Sobic006G002201 Sobic005G105500--Sobic006G002201 Sobic001G201500 Sobic001G201500 Sobic006G056600--Sobic001G201500 Sobic006G242300 Sobic006G242300 Sobic006G056600--Sobic006G242300 Sobic001G067900 Sobic001G067900 Sobic006G056600--Sobic001G067900 Sobic004G072800 Sobic004G072800 Sobic006G056600--Sobic004G072800 Sobic001G041200 Sobic001G041200 Sobic006G056600--Sobic001G041200 Sobic006G056600--Sobic001G091900 Sobic006G056600--Sobic002G341800 Sobic006G056600--Sobic002G014400 Sobic010G247400 Sobic010G247400 Sobic006G056600--Sobic010G247400 Sobic001G091900--Sobic004G326600 Sobic003G160900 Sobic003G160900 Sobic001G091900--Sobic003G160900 Sobic009G190300 Sobic009G190300 Sobic001G091900--Sobic009G190300 Sobic001G091900--Sobic006G056600 Sobic001G091900--Sobic001G481700 Sobic009G211700 Sobic009G211700 Sobic001G091900--Sobic009G211700 Sobic001G091900--Sobic002G341800 Sobic001G091900--Sobic002G143000 Sobic001G091900--Sobic001G458700 Sobic002G268400--Sobic010G057900 Sobic001G152000 Sobic001G152000 Sobic002G268400--Sobic001G152000 Sobic004G074300 Sobic004G074300 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic009G033900 Sobic009G033900 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800
Octagon: transcription factors


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