Gene annotation
Transcriptome id Sobic.001G201500.1
Synonym Sb01g017770, ATRH8, RH8
Functional annotation -
UniProt C5WWE0
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF254
NCBI CDD -
KEGG Orthology K12614; DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G00660 : RNAhelicase-like 8
RAP-DB (Rice) LOC_Os04g45040.3 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a020984 , Zm00025a006405 , Zm00025a017479
Brachypodium KQJ97355
Barley HORVU1Hr1G046020.5 , HORVU1Hr1G046020.4 , HORVU1Hr1G046020.7 , HORVU1Hr1G046020.6 , HORVU1Hr1G046020.3 , HORVU1Hr1G046020.2 , HORVU1Hr1G046020.1
Wheat TraesCS1B02G189900 , TraesCS1D02G164500 , TraesCS1A02G174600
Populus -


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cDNA sequences
Sobic.001G201500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
2 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
3 Sobic.010G002400 glutamine cyclotransferase precursor, putative, expressed -
4 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.005G155700 methyltransferase, putative, expressed -
6 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
7 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
8 Sobic.003G287100 NADPH reductase, putative, expressed -
9 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
10 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
11 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
12 Sobic.003G400100 leaf senescence related protein, putative, expressed -
13 Sobic.008G004400 GIL1, putative, expressed -
14 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
15 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
16 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
17 Sobic.004G072800 expressed protein -
18 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
19 Sobic.002G317300 CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
20 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1


Gene co-expression network
sample Sobic001G201500 Sobic001G201500 Sobic001G201400 Sobic001G201400 Sobic001G201500--Sobic001G201400 Sobic006G056600 Sobic006G056600 Sobic001G201500--Sobic006G056600 Sobic010G002400 Sobic010G002400 Sobic001G201500--Sobic010G002400 Sobic002G313500 Sobic002G313500 Sobic001G201500--Sobic002G313500 Sobic005G155700 Sobic005G155700 Sobic001G201500--Sobic005G155700 Sobic009G075800 Sobic009G075800 Sobic001G201500--Sobic009G075800 Sobic003G012200 Sobic003G012200 Sobic001G201500--Sobic003G012200 Sobic003G287100 Sobic003G287100 Sobic001G201500--Sobic003G287100 Sobic001G033500 Sobic001G033500 Sobic001G201500--Sobic001G033500 Sobic001G201400--Sobic001G201500 Sobic004G039600 Sobic004G039600 Sobic001G201400--Sobic004G039600 Sobic003G187500 Sobic003G187500 Sobic001G201400--Sobic003G187500 Sobic008G131000 Sobic008G131000 Sobic001G201400--Sobic008G131000 Sobic003G401100 Sobic003G401100 Sobic001G201400--Sobic003G401100 Sobic010G053800 Sobic010G053800 Sobic001G201400--Sobic010G053800 Sobic006G252700 Sobic006G252700 Sobic001G201400--Sobic006G252700 Sobic009G257800 Sobic009G257800 Sobic001G201400--Sobic009G257800 Sobic001G466700 Sobic001G466700 Sobic001G201400--Sobic001G466700 Sobic006G056600--Sobic001G201500 Sobic006G242300 Sobic006G242300 Sobic006G056600--Sobic006G242300 Sobic001G067900 Sobic001G067900 Sobic006G056600--Sobic001G067900 Sobic004G072800 Sobic004G072800 Sobic006G056600--Sobic004G072800 Sobic001G041200 Sobic001G041200 Sobic006G056600--Sobic001G041200 Sobic001G091900 Sobic001G091900 Sobic006G056600--Sobic001G091900 Sobic002G341800 Sobic002G341800 Sobic006G056600--Sobic002G341800 Sobic002G014400 Sobic002G014400 Sobic006G056600--Sobic002G014400 Sobic010G247400 Sobic010G247400 Sobic006G056600--Sobic010G247400 Sobic003G338500 Sobic003G338500 Sobic010G002400--Sobic003G338500 Sobic004G275700 Sobic004G275700 Sobic010G002400--Sobic004G275700 Sobic010G002400--Sobic001G201500 Sobic010G193900 Sobic010G193900 Sobic010G002400--Sobic010G193900 Sobic010G002400--Sobic005G155700 Sobic010G223300 Sobic010G223300 Sobic010G002400--Sobic010G223300 Sobic002G308500 Sobic002G308500 Sobic010G002400--Sobic002G308500 Sobic010G002400--Sobic003G012200 Sobic006G176600 Sobic006G176600 Sobic010G002400--Sobic006G176600 Sobic001G143500 Sobic001G143500 Sobic002G313500--Sobic001G143500 Sobic001G371200 Sobic001G371200 Sobic002G313500--Sobic001G371200 Sobic004G350100 Sobic004G350100 Sobic002G313500--Sobic004G350100 Sobic002G378200 Sobic002G378200 Sobic002G313500--Sobic002G378200 Sobic004G283000 Sobic004G283000 Sobic002G313500--Sobic004G283000 Sobic008G139700 Sobic008G139700 Sobic002G313500--Sobic008G139700 Sobic004G007300 Sobic004G007300 Sobic002G313500--Sobic004G007300 Sobic002G313500--Sobic001G466700 Sobic010G017800 Sobic010G017800 Sobic002G313500--Sobic010G017800 Sobic005G155700--Sobic001G201500 Sobic005G155700--Sobic010G002400 Sobic006G044600 Sobic006G044600 Sobic005G155700--Sobic006G044600 Sobic010G080200 Sobic010G080200 Sobic005G155700--Sobic010G080200 Sobic010G228500 Sobic010G228500 Sobic005G155700--Sobic010G228500 Sobic002G300700 Sobic002G300700 Sobic005G155700--Sobic002G300700 Sobic004G358600 Sobic004G358600 Sobic005G155700--Sobic004G358600 Sobic005G155700--Sobic003G012200 Sobic001G199100 Sobic001G199100 Sobic005G155700--Sobic001G199100 Sobic009G222500 Sobic009G222500 Sobic009G075800--Sobic009G222500 Sobic009G075800--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic009G075800--Sobic010G020400 Sobic009G075800--Sobic001G199100 Sobic008G004600 Sobic008G004600 Sobic009G075800--Sobic008G004600 Sobic009G075800--Sobic003G012200 Sobic006G136400 Sobic006G136400 Sobic009G075800--Sobic006G136400 Sobic001G392300 Sobic001G392300 Sobic009G075800--Sobic001G392300 Sobic007G071900 Sobic007G071900 Sobic009G075800--Sobic007G071900 Sobic003G012200--Sobic001G199100 Sobic003G344900 Sobic003G344900 Sobic003G012200--Sobic003G344900 Sobic010G000900 Sobic010G000900 Sobic003G012200--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic003G012200--Sobic001G085100 Sobic004G348300 Sobic004G348300 Sobic003G012200--Sobic004G348300 Sobic003G012200--Sobic009G075800 Sobic003G012200--Sobic004G275700 Sobic009G259400 Sobic009G259400 Sobic003G012200--Sobic009G259400 Sobic001G047400 Sobic001G047400 Sobic003G012200--Sobic001G047400 Sobic004G339100 Sobic004G339100 Sobic003G287100--Sobic004G339100 Sobic001G017700 Sobic001G017700 Sobic003G287100--Sobic001G017700 Sobic003G287100--Sobic001G201500 Sobic003G287100--Sobic001G201400 Sobic007G184500 Sobic007G184500 Sobic003G287100--Sobic007G184500 Sobic003G382500 Sobic003G382500 Sobic003G287100--Sobic003G382500 Sobic007G077400 Sobic007G077400 Sobic003G287100--Sobic007G077400 Sobic006G114500 Sobic006G114500 Sobic003G287100--Sobic006G114500 Sobic006G208500 Sobic006G208500 Sobic003G287100--Sobic006G208500 Sobic001G283200 Sobic001G283200 Sobic001G033500--Sobic001G283200 Sobic001G033500--Sobic007G184500 Sobic006G148200 Sobic006G148200 Sobic001G033500--Sobic006G148200 Sobic007G118000 Sobic007G118000 Sobic001G033500--Sobic007G118000 Sobic001G033500--Sobic001G085100 Sobic010G073100 Sobic010G073100 Sobic001G033500--Sobic010G073100 Sobic001G458700 Sobic001G458700 Sobic001G033500--Sobic001G458700 Sobic002G113800 Sobic002G113800 Sobic001G033500--Sobic002G113800 Sobic001G033500--Sobic003G012200
Octagon: transcription factors


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