Gene annotation
Transcriptome id Sobic.010G017800.1
Synonym
Functional annotation LMBR1 integral membrane protein, putative, expressed
UniProt A0A194YGT2
Pfam PF04791
Panther DB PTHR31652
NCBI CDD -
KEGG Orthology K14617; LMBR1 domain-containing protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G01460 : LMBR1-like membrane protein
RAP-DB (Rice) LOC_Os06g03760.2 : LMBR1 integral membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a050213 , Zm00025a041349
Brachypodium KQK19662
Barley HORVU7Hr1G011080.6 , HORVU7Hr1G011080.5 , HORVU7Hr1G011080.4 , HORVU7Hr1G011080.3 , HORVU7Hr1G011080.2 , HORVU7Hr1G011080.1
Wheat TraesCS4A02G429400 , TraesCS4A02G429400 , TraesCS4A02G429400 , TraesCS7A02G060000 , TraesCS4A02G429400 , TraesCS7D02G054500
Populus -


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cDNA sequences
Sobic.010G017800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.001G518400 EF hand family protein, putative, expressed -
3 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
4 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
5 Sobic.009G229600 tRNA-binding arm, putative, expressed -
6 Sobic.004G325400 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
7 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
8 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
9 Sobic.003G340900 SAG20, putative, expressed -
10 Sobic.006G138000 expressed protein -
11 Sobic.007G203500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
12 Sobic.006G278700 expressed protein -
13 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
14 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
15 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
16 Sobic.003G400100 leaf senescence related protein, putative, expressed -
17 Sobic.001G163400 roothairless 1, putative, expressed -
18 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
19 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
20 Sobic.001G078100 expressed protein -


Gene co-expression network
sample Sobic010G017800 Sobic010G017800 Sobic002G313500 Sobic002G313500 Sobic010G017800--Sobic002G313500 Sobic001G518400 Sobic001G518400 Sobic010G017800--Sobic001G518400 Sobic008G139700 Sobic008G139700 Sobic010G017800--Sobic008G139700 Sobic001G335900 Sobic001G335900 Sobic010G017800--Sobic001G335900 Sobic009G229600 Sobic009G229600 Sobic010G017800--Sobic009G229600 Sobic004G325400 Sobic004G325400 Sobic010G017800--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic010G017800--Sobic005G216300 Sobic001G371200 Sobic001G371200 Sobic010G017800--Sobic001G371200 Sobic003G340900 Sobic003G340900 Sobic010G017800--Sobic003G340900 Sobic001G143500 Sobic001G143500 Sobic002G313500--Sobic001G143500 Sobic002G313500--Sobic001G371200 Sobic004G350100 Sobic004G350100 Sobic002G313500--Sobic004G350100 Sobic002G378200 Sobic002G378200 Sobic002G313500--Sobic002G378200 Sobic004G283000 Sobic004G283000 Sobic002G313500--Sobic004G283000 Sobic002G313500--Sobic008G139700 Sobic004G007300 Sobic004G007300 Sobic002G313500--Sobic004G007300 Sobic001G466700 Sobic001G466700 Sobic002G313500--Sobic001G466700 Sobic002G313500--Sobic010G017800 Sobic001G170100 Sobic001G170100 Sobic001G518400--Sobic001G170100 Sobic006G138000 Sobic006G138000 Sobic001G518400--Sobic006G138000 Sobic001G518400--Sobic001G335900 Sobic001G078100 Sobic001G078100 Sobic001G518400--Sobic001G078100 Sobic001G518400--Sobic009G229600 Sobic010G275500 Sobic010G275500 Sobic001G518400--Sobic010G275500 Sobic006G202200 Sobic006G202200 Sobic001G518400--Sobic006G202200 Sobic003G126600 Sobic003G126600 Sobic001G518400--Sobic003G126600 Sobic001G369000 Sobic001G369000 Sobic001G518400--Sobic001G369000 Sobic008G139700--Sobic002G313500 Sobic008G139700--Sobic010G017800 Sobic001G080000 Sobic001G080000 Sobic008G139700--Sobic001G080000 Sobic008G139700--Sobic001G143500 Sobic002G180000 Sobic002G180000 Sobic008G139700--Sobic002G180000 Sobic003G045400 Sobic003G045400 Sobic008G139700--Sobic003G045400 Sobic007G205000 Sobic007G205000 Sobic008G139700--Sobic007G205000 Sobic006G267300 Sobic006G267300 Sobic008G139700--Sobic006G267300 Sobic010G105600 Sobic010G105600 Sobic008G139700--Sobic010G105600 Sobic001G335900--Sobic001G369000 Sobic001G335900--Sobic006G138000 Sobic001G335900--Sobic001G518400 Sobic001G335900--Sobic001G170100 Sobic003G240700 Sobic003G240700 Sobic001G335900--Sobic003G240700 Sobic001G335900--Sobic009G229600 Sobic009G049400 Sobic009G049400 Sobic001G335900--Sobic009G049400 Sobic007G120500 Sobic007G120500 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic009G229600--Sobic009G049400 Sobic009G229600--Sobic001G369000 Sobic009G229600--Sobic001G335900 Sobic003G427600 Sobic003G427600 Sobic009G229600--Sobic003G427600 Sobic003G270600 Sobic003G270600 Sobic009G229600--Sobic003G270600 Sobic009G229600--Sobic006G202200 Sobic009G229600--Sobic001G518400 Sobic004G039600 Sobic004G039600 Sobic009G229600--Sobic004G039600 Sobic009G229600--Sobic007G120500 Sobic009G257800 Sobic009G257800 Sobic004G325400--Sobic009G257800 Sobic007G027700 Sobic007G027700 Sobic004G325400--Sobic007G027700 Sobic007G009400 Sobic007G009400 Sobic004G325400--Sobic007G009400 Sobic003G401100 Sobic003G401100 Sobic004G325400--Sobic003G401100 Sobic004G325400--Sobic001G143500 Sobic004G021200 Sobic004G021200 Sobic004G325400--Sobic004G021200 Sobic003G401000 Sobic003G401000 Sobic004G325400--Sobic003G401000 Sobic004G072100 Sobic004G072100 Sobic004G325400--Sobic004G072100 Sobic008G127400 Sobic008G127400 Sobic004G325400--Sobic008G127400 Sobic003G099300 Sobic003G099300 Sobic005G216300--Sobic003G099300 Sobic005G216300--Sobic007G027700 Sobic005G216300--Sobic004G039600 Sobic005G216300--Sobic001G369000 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500 Sobic007G118200 Sobic007G118200 Sobic001G371200--Sobic007G118200 Sobic001G371200--Sobic002G313500 Sobic001G371200--Sobic001G466700 Sobic006G252700 Sobic006G252700 Sobic001G371200--Sobic006G252700 Sobic006G278700 Sobic006G278700 Sobic001G371200--Sobic006G278700 Sobic001G371200--Sobic002G378200 Sobic007G200600 Sobic007G200600 Sobic001G371200--Sobic007G200600 Sobic003G081000 Sobic003G081000 Sobic001G371200--Sobic003G081000 Sobic001G371200--Sobic004G283000 Sobic003G340900--Sobic010G017800 Sobic003G259400 Sobic003G259400 Sobic003G340900--Sobic003G259400 Sobic003G340900--Sobic001G078100 Sobic002G143900 Sobic002G143900 Sobic003G340900--Sobic002G143900 Sobic006G044000 Sobic006G044000 Sobic003G340900--Sobic006G044000 Sobic003G340900--Sobic001G518400 Sobic003G412300 Sobic003G412300 Sobic003G340900--Sobic003G412300 Sobic003G340900--Sobic007G027700 Sobic003G340900--Sobic005G216300
Octagon: transcription factors


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