Gene annotation
Transcriptome id Sobic.007G203500.1
Synonym IAA25, ARF7, BIP, NPH4, auxin response factor, IAA21, IAA23, TIR5, MSG1, SbARF17, Sb07g027080
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt C6JSD0 , C5YIB6
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT5G20730 : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
RAP-DB (Rice) LOC_Os08g40900.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a005152
Brachypodium KQJ98997 , PNT68426
Barley HORVU7Hr1G051930.7 , HORVU7Hr1G051930.6 , HORVU7Hr1G051930.5 , HORVU7Hr1G051930.4 , HORVU7Hr1G051930.3 , HORVU7Hr1G051930.2 , HORVU7Hr1G051930.1 , HORVU7Hr1G051930.9 , HORVU7Hr1G051930.8
Wheat TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7A02G252000 , TraesCS7A02G252000 , TraesCS7A02G252000 , TraesCS7A02G252000 , TraesCS7A02G252000 , TraesCS7D02G250100 , TraesCS7D02G250100 , TraesCS7D02G250100 , TraesCS7D02G250100 , TraesCS7D02G250100
Populus PNS92954 , PNS92952 , PNS92953 , PNS94419 , PNS94418 , PNS94417


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cDNA sequences
Sobic.007G203500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
2 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
3 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
4 Sobic.006G052500 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed K00164: OGDH, 2-oxoglutarate dehydrogenase E1 component
5 Sobic.001G539016 - -
6 Sobic.003G313400 expressed protein -
7 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
8 Sobic.009G229600 tRNA-binding arm, putative, expressed -
9 Sobic.010G106900 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed -
10 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
11 Sobic.009G042700 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
12 Sobic.004G325400 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
13 Sobic.001G518400 EF hand family protein, putative, expressed -
14 Sobic.007G208900 resistance protein LR10, putative, expressed -
15 Sobic.002G301500 amidase, putative, expressed K01426: E3.5.1.4, amidase
16 Sobic.003G331400 expressed protein -
17 Sobic.005G110544 - -
18 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
19 Sobic.010G043600 IQ calmodulin-binding motif domain containing protein, expressed -
20 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -


Gene co-expression network
sample Sobic007G203500 Sobic007G203500 Sobic010G017800 Sobic010G017800 Sobic007G203500--Sobic010G017800 Sobic003G126600 Sobic003G126600 Sobic007G203500--Sobic003G126600 Sobic003G401000 Sobic003G401000 Sobic007G203500--Sobic003G401000 Sobic006G052500 Sobic006G052500 Sobic007G203500--Sobic006G052500 Sobic001G539016 Sobic001G539016 Sobic007G203500--Sobic001G539016 Sobic003G313400 Sobic003G313400 Sobic007G203500--Sobic003G313400 Sobic009G257800 Sobic009G257800 Sobic007G203500--Sobic009G257800 Sobic009G229600 Sobic009G229600 Sobic007G203500--Sobic009G229600 Sobic010G106900 Sobic010G106900 Sobic007G203500--Sobic010G106900 Sobic002G313500 Sobic002G313500 Sobic010G017800--Sobic002G313500 Sobic001G518400 Sobic001G518400 Sobic010G017800--Sobic001G518400 Sobic008G139700 Sobic008G139700 Sobic010G017800--Sobic008G139700 Sobic001G335900 Sobic001G335900 Sobic010G017800--Sobic001G335900 Sobic010G017800--Sobic009G229600 Sobic004G325400 Sobic004G325400 Sobic010G017800--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic010G017800--Sobic005G216300 Sobic001G371200 Sobic001G371200 Sobic010G017800--Sobic001G371200 Sobic003G340900 Sobic003G340900 Sobic010G017800--Sobic003G340900 Sobic004G039600 Sobic004G039600 Sobic003G126600--Sobic004G039600 Sobic003G249600 Sobic003G249600 Sobic003G126600--Sobic003G249600 Sobic003G126600--Sobic009G229600 Sobic003G187500 Sobic003G187500 Sobic003G126600--Sobic003G187500 Sobic010G053800 Sobic010G053800 Sobic003G126600--Sobic010G053800 Sobic003G126600--Sobic001G518400 Sobic001G369000 Sobic001G369000 Sobic003G126600--Sobic001G369000 Sobic003G187200 Sobic003G187200 Sobic003G126600--Sobic003G187200 Sobic004G072100 Sobic004G072100 Sobic003G126600--Sobic004G072100 Sobic002G158700 Sobic002G158700 Sobic003G401000--Sobic002G158700 Sobic003G187400 Sobic003G187400 Sobic003G401000--Sobic003G187400 Sobic002G157300 Sobic002G157300 Sobic003G401000--Sobic002G157300 Sobic003G401000--Sobic009G257800 Sobic001G155000 Sobic001G155000 Sobic003G401000--Sobic001G155000 Sobic009G040700 Sobic009G040700 Sobic003G401000--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G401000--Sobic001G094000 Sobic006G028200 Sobic006G028200 Sobic003G401000--Sobic006G028200 Sobic003G008500 Sobic003G008500 Sobic003G401000--Sobic003G008500 Sobic002G310200 Sobic002G310200 Sobic006G052500--Sobic002G310200 Sobic009G219000 Sobic009G219000 Sobic006G052500--Sobic009G219000 Sobic009G042700 Sobic009G042700 Sobic006G052500--Sobic009G042700 Sobic002G067600 Sobic002G067600 Sobic006G052500--Sobic002G067600 Sobic006G052500--Sobic007G203500 Sobic006G052800 Sobic006G052800 Sobic006G052500--Sobic006G052800 Sobic006G052500--Sobic010G053800 Sobic007G134600 Sobic007G134600 Sobic006G052500--Sobic007G134600 Sobic010G056000 Sobic010G056000 Sobic006G052500--Sobic010G056000 Sobic001G352900 Sobic001G352900 Sobic001G539016--Sobic001G352900 Sobic003G293200 Sobic003G293200 Sobic001G539016--Sobic003G293200 Sobic009G005100 Sobic009G005100 Sobic001G539016--Sobic009G005100 Sobic004G260100 Sobic004G260100 Sobic001G539016--Sobic004G260100 Sobic010G223100 Sobic010G223100 Sobic001G539016--Sobic010G223100 Sobic001G334700 Sobic001G334700 Sobic001G539016--Sobic001G334700 Sobic003G445500 Sobic003G445500 Sobic001G539016--Sobic003G445500 Sobic001G102700 Sobic001G102700 Sobic001G539016--Sobic001G102700 Sobic001G287500 Sobic001G287500 Sobic001G539016--Sobic001G287500 Sobic004G358400 Sobic004G358400 Sobic003G313400--Sobic004G358400 Sobic003G313400--Sobic007G203500 Sobic004G002400 Sobic004G002400 Sobic003G313400--Sobic004G002400 Sobic003G331400 Sobic003G331400 Sobic003G313400--Sobic003G331400 Sobic004G354400 Sobic004G354400 Sobic003G313400--Sobic004G354400 Sobic004G002100 Sobic004G002100 Sobic003G313400--Sobic004G002100 Sobic003G313400--Sobic009G229600 Sobic005G026200 Sobic005G026200 Sobic003G313400--Sobic005G026200 Sobic006G245400 Sobic006G245400 Sobic003G313400--Sobic006G245400 Sobic009G257800--Sobic003G401000 Sobic006G267300 Sobic006G267300 Sobic009G257800--Sobic006G267300 Sobic003G081000 Sobic003G081000 Sobic009G257800--Sobic003G081000 Sobic004G283000 Sobic004G283000 Sobic009G257800--Sobic004G283000 Sobic004G057400 Sobic004G057400 Sobic009G257800--Sobic004G057400 Sobic002G090800 Sobic002G090800 Sobic009G257800--Sobic002G090800 Sobic006G252700 Sobic006G252700 Sobic009G257800--Sobic006G252700 Sobic009G257800--Sobic004G325400 Sobic001G090400 Sobic001G090400 Sobic009G257800--Sobic001G090400 Sobic009G049400 Sobic009G049400 Sobic009G229600--Sobic009G049400 Sobic009G229600--Sobic001G369000 Sobic009G229600--Sobic001G335900 Sobic003G427600 Sobic003G427600 Sobic009G229600--Sobic003G427600 Sobic003G270600 Sobic003G270600 Sobic009G229600--Sobic003G270600 Sobic006G202200 Sobic006G202200 Sobic009G229600--Sobic006G202200 Sobic009G229600--Sobic001G518400 Sobic009G229600--Sobic004G039600 Sobic007G120500 Sobic007G120500 Sobic009G229600--Sobic007G120500 Sobic010G147833 Sobic010G147833 Sobic010G106900--Sobic010G147833 Sobic010G106900--Sobic003G126600 Sobic002G260900 Sobic002G260900 Sobic010G106900--Sobic002G260900 Sobic001G017600 Sobic001G017600 Sobic010G106900--Sobic001G017600 Sobic008G133400 Sobic008G133400 Sobic010G106900--Sobic008G133400 Sobic008G083000 Sobic008G083000 Sobic010G106900--Sobic008G083000 Sobic010G106900--Sobic007G203500 Sobic002G392700 Sobic002G392700 Sobic010G106900--Sobic002G392700 Sobic002G301500 Sobic002G301500 Sobic010G106900--Sobic002G301500
Octagon: transcription factors


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