Gene annotation
Transcriptome id Sobic.006G052500.1
Synonym Sb06g013930
Functional annotation 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
UniProt C5YET5
Pfam PF16078 PF16870 PF00676 PF02779
Panther DB PTHR23152 PTHR23152:SF8
NCBI CDD -
KEGG Orthology K00164; OGDH, 2-oxoglutarate dehydrogenase E1 component
Gene Ontology GO:0016624; oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO:0008152metabolic process GO:0006099tricarboxylic acid cycle GO:0004591oxoglutarate dehydrogenase (succinyl-transferring) activity


Orthologs (automatic annotation)
TAIR AT5G65750 : 2-oxoglutarate dehydrogenase, E1 component
RAP-DB (Rice) LOC_Os04g32020.1 : 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a011751 , Zm00025a055906 , Zm00025a041662
Brachypodium KQJ82296 , KQJ82288 , KQJ82289
Barley HORVU2Hr1G013170.1 , HORVU2Hr1G013170.2 , HORVU2Hr1G070090.5 , HORVU2Hr1G070090.1 , HORVU2Hr1G070090.2 , HORVU2Hr1G070090.3
Wheat TraesCS2B02G094300 , TraesCS2D02G283300 , TraesCS2D02G283300 , TraesCS2A02G079500 , TraesCS2A02G284400 , TraesCS2B02G301400 , TraesCS2B02G301400 , TraesCS2D02G076900
Populus PNT22845


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cDNA sequences
Sobic.006G052500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G310200 expressed protein -
2 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
3 Sobic.009G042700 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
4 Sobic.002G067600 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
5 Sobic.007G203500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
6 Sobic.006G052800 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed K00164: OGDH, 2-oxoglutarate dehydrogenase E1 component
7 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
8 Sobic.007G134600 agenet domain containing protein, expressed -
9 Sobic.010G056000 GAGA-binding protein, putative, expressed -
10 Sobic.002G067100 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
11 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
12 Sobic.002G187801 - K03134: transcription initiation factor TFIID subunit 10
13 Sobic.003G109700 expressed protein -
14 Sobic.003G328600 proline-rich family protein, putative, expressed -
15 Sobic.001G261456 - -
16 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
17 Sobic.009G215800 OsFBX173 - F-box domain containing protein, expressed -
18 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
19 Sobic.008G020200 UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed K07441: beta-1,4-N-acetylglucosaminyltransferase
20 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1


Gene co-expression network
sample Sobic006G052500 Sobic006G052500 Sobic002G310200 Sobic002G310200 Sobic006G052500--Sobic002G310200 Sobic009G219000 Sobic009G219000 Sobic006G052500--Sobic009G219000 Sobic009G042700 Sobic009G042700 Sobic006G052500--Sobic009G042700 Sobic002G067600 Sobic002G067600 Sobic006G052500--Sobic002G067600 Sobic007G203500 Sobic007G203500 Sobic006G052500--Sobic007G203500 Sobic006G052800 Sobic006G052800 Sobic006G052500--Sobic006G052800 Sobic010G053800 Sobic010G053800 Sobic006G052500--Sobic010G053800 Sobic007G134600 Sobic007G134600 Sobic006G052500--Sobic007G134600 Sobic010G056000 Sobic010G056000 Sobic006G052500--Sobic010G056000 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic008G047800 Sobic008G047800 Sobic002G310200--Sobic008G047800 Sobic007G217000 Sobic007G217000 Sobic002G310200--Sobic007G217000 Sobic004G084300 Sobic004G084300 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic008G067600 Sobic008G067600 Sobic002G310200--Sobic008G067600 Sobic004G067700 Sobic004G067700 Sobic002G310200--Sobic004G067700 Sobic001G541100 Sobic001G541100 Sobic009G219000--Sobic001G541100 Sobic001G323000 Sobic001G323000 Sobic009G219000--Sobic001G323000 Sobic001G261456 Sobic001G261456 Sobic009G219000--Sobic001G261456 Sobic008G046500 Sobic008G046500 Sobic009G219000--Sobic008G046500 Sobic001G466700 Sobic001G466700 Sobic009G219000--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic009G219000--Sobic004G274400 Sobic009G138100 Sobic009G138100 Sobic009G219000--Sobic009G138100 Sobic001G105500 Sobic001G105500 Sobic009G219000--Sobic001G105500 Sobic001G371200 Sobic001G371200 Sobic009G219000--Sobic001G371200 Sobic009G042700--Sobic010G053800 Sobic004G002400 Sobic004G002400 Sobic009G042700--Sobic004G002400 Sobic009G042700--Sobic009G219000 Sobic009G042700--Sobic001G466700 Sobic004G004300 Sobic004G004300 Sobic009G042700--Sobic004G004300 Sobic001G152280 Sobic001G152280 Sobic009G042700--Sobic001G152280 Sobic001G281100 Sobic001G281100 Sobic009G042700--Sobic001G281100 Sobic001G220300 Sobic001G220300 Sobic009G042700--Sobic001G220300 Sobic009G042700--Sobic006G052500 Sobic002G067100 Sobic002G067100 Sobic002G067600--Sobic002G067100 Sobic001G127000 Sobic001G127000 Sobic002G067600--Sobic001G127000 Sobic002G055100 Sobic002G055100 Sobic002G067600--Sobic002G055100 Sobic002G067600--Sobic006G052500 Sobic002G067600--Sobic009G219000 Sobic007G006900 Sobic007G006900 Sobic002G067600--Sobic007G006900 Sobic006G126100 Sobic006G126100 Sobic002G067600--Sobic006G126100 Sobic003G126600 Sobic003G126600 Sobic002G067600--Sobic003G126600 Sobic003G051200 Sobic003G051200 Sobic002G067600--Sobic003G051200 Sobic010G017800 Sobic010G017800 Sobic007G203500--Sobic010G017800 Sobic007G203500--Sobic003G126600 Sobic003G401000 Sobic003G401000 Sobic007G203500--Sobic003G401000 Sobic007G203500--Sobic006G052500 Sobic001G539016 Sobic001G539016 Sobic007G203500--Sobic001G539016 Sobic003G313400 Sobic003G313400 Sobic007G203500--Sobic003G313400 Sobic009G257800 Sobic009G257800 Sobic007G203500--Sobic009G257800 Sobic009G229600 Sobic009G229600 Sobic007G203500--Sobic009G229600 Sobic010G106900 Sobic010G106900 Sobic007G203500--Sobic010G106900 Sobic006G052800--Sobic006G126100 Sobic009G245800 Sobic009G245800 Sobic006G052800--Sobic009G245800 Sobic006G052800--Sobic004G004300 Sobic006G012500 Sobic006G012500 Sobic006G052800--Sobic006G012500 Sobic008G004600 Sobic008G004600 Sobic006G052800--Sobic008G004600 Sobic006G052800--Sobic010G053800 Sobic005G026200 Sobic005G026200 Sobic006G052800--Sobic005G026200 Sobic010G275500 Sobic010G275500 Sobic006G052800--Sobic010G275500 Sobic004G006900 Sobic004G006900 Sobic006G052800--Sobic004G006900 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic010G053800--Sobic004G039600 Sobic007G134600--Sobic002G310200 Sobic009G215800 Sobic009G215800 Sobic007G134600--Sobic009G215800 Sobic006G237400 Sobic006G237400 Sobic007G134600--Sobic006G237400 Sobic007G134600--Sobic010G056000 Sobic001G351700 Sobic001G351700 Sobic007G134600--Sobic001G351700 Sobic007G134600--Sobic001G222500 Sobic002G157300 Sobic002G157300 Sobic007G134600--Sobic002G157300 Sobic006G273200 Sobic006G273200 Sobic007G134600--Sobic006G273200 Sobic007G134600--Sobic008G067600 Sobic001G111900 Sobic001G111900 Sobic010G056000--Sobic001G111900 Sobic003G084900 Sobic003G084900 Sobic010G056000--Sobic003G084900 Sobic010G028800 Sobic010G028800 Sobic010G056000--Sobic010G028800 Sobic009G127900 Sobic009G127900 Sobic010G056000--Sobic009G127900 Sobic003G087400 Sobic003G087400 Sobic010G056000--Sobic003G087400 Sobic003G187400 Sobic003G187400 Sobic010G056000--Sobic003G187400 Sobic005G077466 Sobic005G077466 Sobic010G056000--Sobic005G077466 Sobic001G094000 Sobic001G094000 Sobic010G056000--Sobic001G094000 Sobic010G056000--Sobic002G157300
Octagon: transcription factors


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