Gene annotation
Transcriptome id Sobic.006G052800.1
Synonym Sb06g013940
Functional annotation 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
UniProt C5YET6
Pfam PF16078 PF16870 PF00676 PF02779
Panther DB PTHR23152 PTHR23152:SF8
NCBI CDD -
KEGG Orthology K00164; OGDH, 2-oxoglutarate dehydrogenase E1 component
Gene Ontology GO:0016624; oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO:0008152metabolic process GO:0006099tricarboxylic acid cycle GO:0004591oxoglutarate dehydrogenase (succinyl-transferring) activity


Orthologs (automatic annotation)
TAIR AT5G65750 : 2-oxoglutarate dehydrogenase, E1 component
RAP-DB (Rice) LOC_Os04g32020.1 : 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a011751 , Zm00025a055906 , Zm00025a041662
Brachypodium KQJ82296 , KQJ82288 , KQJ82289
Barley HORVU2Hr1G013170.1 , HORVU2Hr1G013170.2 , HORVU2Hr1G070090.5 , HORVU2Hr1G070090.1 , HORVU2Hr1G070090.2 , HORVU2Hr1G070090.3
Wheat TraesCS2B02G094300 , TraesCS2D02G283300 , TraesCS2D02G283300 , TraesCS2A02G079500 , TraesCS2A02G284400 , TraesCS2B02G301400 , TraesCS2B02G301400 , TraesCS2D02G076900
Populus PNT22845


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cDNA sequences
Sobic.006G052800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
2 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
3 Sobic.004G004300 expressed protein -
4 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
5 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
6 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
7 Sobic.005G026200 HEAT repeat family protein, putative, expressed K11886: proteasome component ECM29
8 Sobic.010G275500 EF hand family protein, putative, expressed -
9 Sobic.004G006900 OsFBX49 - F-box domain containing protein, expressed -
10 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
11 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
12 Sobic.002G310200 expressed protein -
13 Sobic.010G116600 FHA domain containing protein, putative, expressed -
14 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
15 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
16 Sobic.001G347500 expressed protein -
17 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
18 Sobic.002G397500 SAC3/GANP family protein, expressed -
19 Sobic.010G232600 solute carrier family 35 member F5, putative, expressed K15289: solute carrier family 35, member F5
20 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10


Gene co-expression network
sample Sobic006G052800 Sobic006G052800 Sobic006G126100 Sobic006G126100 Sobic006G052800--Sobic006G126100 Sobic009G245800 Sobic009G245800 Sobic006G052800--Sobic009G245800 Sobic004G004300 Sobic004G004300 Sobic006G052800--Sobic004G004300 Sobic006G012500 Sobic006G012500 Sobic006G052800--Sobic006G012500 Sobic008G004600 Sobic008G004600 Sobic006G052800--Sobic008G004600 Sobic010G053800 Sobic010G053800 Sobic006G052800--Sobic010G053800 Sobic005G026200 Sobic005G026200 Sobic006G052800--Sobic005G026200 Sobic010G275500 Sobic010G275500 Sobic006G052800--Sobic010G275500 Sobic004G006900 Sobic004G006900 Sobic006G052800--Sobic004G006900 Sobic006G126100--Sobic004G004300 Sobic006G126100--Sobic008G004600 Sobic004G039600 Sobic004G039600 Sobic006G126100--Sobic004G039600 Sobic001G534800 Sobic001G534800 Sobic006G126100--Sobic001G534800 Sobic003G104000 Sobic003G104000 Sobic006G126100--Sobic003G104000 Sobic006G126100--Sobic006G012500 Sobic004G135400 Sobic004G135400 Sobic006G126100--Sobic004G135400 Sobic007G132100 Sobic007G132100 Sobic006G126100--Sobic007G132100 Sobic006G208500 Sobic006G208500 Sobic006G126100--Sobic006G208500 Sobic009G245800--Sobic010G053800 Sobic003G404500 Sobic003G404500 Sobic009G245800--Sobic003G404500 Sobic004G072100 Sobic004G072100 Sobic009G245800--Sobic004G072100 Sobic008G047800 Sobic008G047800 Sobic009G245800--Sobic008G047800 Sobic009G245800--Sobic006G208500 Sobic006G195700 Sobic006G195700 Sobic009G245800--Sobic006G195700 Sobic002G310200 Sobic002G310200 Sobic009G245800--Sobic002G310200 Sobic009G245800--Sobic004G135400 Sobic003G443100 Sobic003G443100 Sobic009G245800--Sobic003G443100 Sobic001G281100 Sobic001G281100 Sobic004G004300--Sobic001G281100 Sobic004G004300--Sobic005G026200 Sobic004G004300--Sobic001G534800 Sobic004G004300--Sobic006G126100 Sobic001G117200 Sobic001G117200 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic001G415300 Sobic001G415300 Sobic004G004300--Sobic001G415300 Sobic004G004300--Sobic010G275500 Sobic005G003300 Sobic005G003300 Sobic004G004300--Sobic005G003300 Sobic006G012500--Sobic004G039600 Sobic006G012500--Sobic010G053800 Sobic008G099800 Sobic008G099800 Sobic006G012500--Sobic008G099800 Sobic006G012500--Sobic010G275500 Sobic006G012500--Sobic004G072100 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic006G012500--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G012500--Sobic007G218000 Sobic008G004600--Sobic006G126100 Sobic006G136400 Sobic006G136400 Sobic008G004600--Sobic006G136400 Sobic008G004600--Sobic004G135400 Sobic008G004600--Sobic005G003300 Sobic010G205800 Sobic010G205800 Sobic008G004600--Sobic010G205800 Sobic008G004600--Sobic006G208500 Sobic008G004600--Sobic004G039600 Sobic001G007000 Sobic001G007000 Sobic008G004600--Sobic001G007000 Sobic002G359400 Sobic002G359400 Sobic008G004600--Sobic002G359400 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic010G053800--Sobic004G039600 Sobic005G026200--Sobic004G004300 Sobic005G026200--Sobic001G534800 Sobic005G026200--Sobic001G281100 Sobic005G026200--Sobic005G003300 Sobic002G397500 Sobic002G397500 Sobic005G026200--Sobic002G397500 Sobic005G026200--Sobic010G053800 Sobic003G072200 Sobic003G072200 Sobic005G026200--Sobic003G072200 Sobic005G026200--Sobic001G065000 Sobic004G113400 Sobic004G113400 Sobic005G026200--Sobic004G113400 Sobic010G275500--Sobic010G053800 Sobic010G275500--Sobic004G072100 Sobic010G275500--Sobic006G012500 Sobic010G275500--Sobic001G155000 Sobic010G275500--Sobic010G116600 Sobic010G069100 Sobic010G069100 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic007G183900 Sobic007G183900 Sobic010G275500--Sobic007G183900 Sobic010G275500--Sobic002G397500 Sobic005G027400 Sobic005G027400 Sobic004G006900--Sobic005G027400 Sobic001G441400 Sobic001G441400 Sobic004G006900--Sobic001G441400 Sobic002G309600 Sobic002G309600 Sobic004G006900--Sobic002G309600 Sobic010G143800 Sobic010G143800 Sobic004G006900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic004G006900--Sobic004G263600 Sobic002G299700 Sobic002G299700 Sobic004G006900--Sobic002G299700 Sobic002G275600 Sobic002G275600 Sobic004G006900--Sobic002G275600 Sobic001G451400 Sobic001G451400 Sobic004G006900--Sobic001G451400 Sobic006G252900 Sobic006G252900 Sobic004G006900--Sobic006G252900
Octagon: transcription factors


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