Gene annotation
Transcriptome id Sobic.007G207200.1
Synonym Sb07g027440
Functional annotation phenylalanyl-tRNA synthetase beta chain, putative, expressed
UniProt C5YIN2
Pfam PF01409 PF03484 PF03483
Panther DB PTHR10947
NCBI CDD -
KEGG Orthology K01890; FARSB, phenylalanyl-tRNA synthetase beta chain
Gene Ontology GO:0005737; cytoplasm GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000049tRNA binding GO:0006432phenylalanyl-tRNA aminoacylation GO:0003723RNA binding GO:0000287magnesium ion binding GO:0004826phenylalanine-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT1G72550 : tRNA synthetase beta subunit family protein
RAP-DB (Rice) LOC_Os05g48510.1 : phenylalanyl-tRNA synthetase beta chain, putative, expressed
MaizeGDB (Corn) Zm00025a041055
Brachypodium KQJ86559
Barley HORVU5Hr1G027730.2 , HORVU5Hr1G027730.3 , HORVU5Hr1G027730.1 , HORVU5Hr1G027730.6 , HORVU5Hr1G027730.7 , HORVU5Hr1G027730.4 , HORVU5Hr1G027730.5 , HORVU5Hr1G027730.8 , HORVU5Hr1G027730.9 , HORVU1Hr1G050920.20 , HORVU1Hr1G050920.21 , HORVU1Hr1G050920.22 , HORVU1Hr1G050920.9 , HORVU5Hr1G027730.11 , HORVU5Hr1G027730.12 , HORVU1Hr1G050920.1 , HORVU1Hr1G050920.3 , HORVU1Hr1G050920.2 , HORVU1Hr1G050920.5 , HORVU1Hr1G050920.4 , HORVU1Hr1G050920.7 , HORVU1Hr1G050920.6 , HORVU5Hr1G027730.10 , HORVU1Hr1G050920.8 , HORVU1Hr1G050920.19 , HORVU1Hr1G050920.18 , HORVU1Hr1G050920.15 , HORVU1Hr1G050920.14 , HORVU1Hr1G050920.17 , HORVU1Hr1G050920.16 , HORVU1Hr1G050920.11 , HORVU1Hr1G050920.10 , HORVU1Hr1G050920.13 , HORVU1Hr1G050920.12
Wheat TraesCS5D02G113200 , TraesCS5D02G113200 , TraesCS5B02G105800 , TraesCS1D02G198800 , TraesCS1A02G195300 , TraesCS5A02G100700 , TraesCS1B02G210000
Populus -


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cDNA sequences
Sobic.007G207200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G166600 semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00145: N-acetyl-gamma-glutamyl-phosphate reductase
2 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
3 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
4 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
5 Sobic.001G407700 leucyl-tRNA synthetase, cytoplasmic, putative, expressed K01869: LARS, leucyl-tRNA synthetase
6 Sobic.009G084900 expressed protein -
7 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
8 Sobic.009G047200 protein kinase domain containing protein, expressed -
9 Sobic.010G116600 FHA domain containing protein, putative, expressed -
10 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
11 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
12 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
13 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
14 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
15 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
16 Sobic.002G397500 SAC3/GANP family protein, expressed -
17 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
18 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
19 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
20 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta


Gene co-expression network
sample Sobic007G207200 Sobic007G207200 Sobic001G166600 Sobic001G166600 Sobic007G207200--Sobic001G166600 Sobic001G219600 Sobic001G219600 Sobic007G207200--Sobic001G219600 Sobic002G317200 Sobic002G317200 Sobic007G207200--Sobic002G317200 Sobic010G166400 Sobic010G166400 Sobic007G207200--Sobic010G166400 Sobic001G407700 Sobic001G407700 Sobic007G207200--Sobic001G407700 Sobic009G084900 Sobic009G084900 Sobic007G207200--Sobic009G084900 Sobic009G056200 Sobic009G056200 Sobic007G207200--Sobic009G056200 Sobic009G047200 Sobic009G047200 Sobic007G207200--Sobic009G047200 Sobic010G116600 Sobic010G116600 Sobic007G207200--Sobic010G116600 Sobic001G166600--Sobic007G207200 Sobic002G143500 Sobic002G143500 Sobic001G166600--Sobic002G143500 Sobic006G058100 Sobic006G058100 Sobic001G166600--Sobic006G058100 Sobic001G166600--Sobic009G084900 Sobic004G236400 Sobic004G236400 Sobic001G166600--Sobic004G236400 Sobic009G245800 Sobic009G245800 Sobic001G166600--Sobic009G245800 Sobic001G166600--Sobic001G219600 Sobic003G141500 Sobic003G141500 Sobic001G166600--Sobic003G141500 Sobic002G359400 Sobic002G359400 Sobic001G166600--Sobic002G359400 Sobic009G260500 Sobic009G260500 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic001G219600--Sobic002G317200 Sobic001G219600--Sobic009G047200 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic002G317200--Sobic001G219600 Sobic004G314000 Sobic004G314000 Sobic002G317200--Sobic004G314000 Sobic001G433800 Sobic001G433800 Sobic002G317200--Sobic001G433800 Sobic003G095900 Sobic003G095900 Sobic002G317200--Sobic003G095900 Sobic004G242400 Sobic004G242400 Sobic002G317200--Sobic004G242400 Sobic002G317200--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic002G317200--Sobic005G112300 Sobic002G317200--Sobic009G260500 Sobic008G014500 Sobic008G014500 Sobic010G166400--Sobic008G014500 Sobic010G166400--Sobic010G116600 Sobic010G059500 Sobic010G059500 Sobic010G166400--Sobic010G059500 Sobic010G166400--Sobic007G207200 Sobic003G093800 Sobic003G093800 Sobic010G166400--Sobic003G093800 Sobic007G042400 Sobic007G042400 Sobic010G166400--Sobic007G042400 Sobic010G166400--Sobic002G317200 Sobic009G177500 Sobic009G177500 Sobic010G166400--Sobic009G177500 Sobic010G166400--Sobic009G084900 Sobic001G407700--Sobic007G207200 Sobic001G244300 Sobic001G244300 Sobic001G407700--Sobic001G244300 Sobic001G407700--Sobic009G056200 Sobic008G063300 Sobic008G063300 Sobic001G407700--Sobic008G063300 Sobic006G086600 Sobic006G086600 Sobic001G407700--Sobic006G086600 Sobic004G340400 Sobic004G340400 Sobic001G407700--Sobic004G340400 Sobic004G131300 Sobic004G131300 Sobic001G407700--Sobic004G131300 Sobic004G320500 Sobic004G320500 Sobic001G407700--Sobic004G320500 Sobic005G172500 Sobic005G172500 Sobic001G407700--Sobic005G172500 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic001G493200 Sobic001G493200 Sobic009G084900--Sobic001G493200 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic009G056200--Sobic005G172500 Sobic001G194200 Sobic001G194200 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic009G056200--Sobic007G207200 Sobic009G056200--Sobic008G063300 Sobic002G142900 Sobic002G142900 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic009G047200--Sobic001G219600 Sobic009G047200--Sobic003G072200 Sobic009G047200--Sobic002G397500 Sobic003G408600 Sobic003G408600 Sobic009G047200--Sobic003G408600 Sobic009G047200--Sobic001G071400 Sobic001G002000 Sobic001G002000 Sobic009G047200--Sobic001G002000 Sobic004G329400 Sobic004G329400 Sobic009G047200--Sobic004G329400 Sobic009G047200--Sobic002G317200 Sobic009G047200--Sobic002G309600 Sobic002G071500 Sobic002G071500 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic010G116600--Sobic003G093800 Sobic009G044800 Sobic009G044800 Sobic010G116600--Sobic009G044800 Sobic004G072100 Sobic004G072100 Sobic010G116600--Sobic004G072100 Sobic010G236400 Sobic010G236400 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic010G116600--Sobic003G408600 Sobic010G053800 Sobic010G053800 Sobic010G116600--Sobic010G053800
Octagon: transcription factors


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