Gene annotation
Transcriptome id Sobic.001G166600.1
Synonym Sb01g014570
Functional annotation semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed
UniProt A0A1B6QJB9
Pfam PF02774 PF01118
Panther DB PTHR32338 PTHR32338:SF8
NCBI CDD KOG4354; N-acetyl-gamma-glutamyl-phosphate reductase
KEGG Orthology K00145; N-acetyl-gamma-glutamyl-phosphate reductase
Gene Ontology GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0008652cellular amino acid biosynthetic process GO:0005737cytoplasm GO:0003942N-acetyl-gamma-glutamyl-phosphate reductase activity


Orthologs (automatic annotation)
TAIR AT2G19940 : oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding
RAP-DB (Rice) LOC_Os03g42110.1 : semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007403
Brachypodium KQK14162
Barley HORVU4Hr1G013720.52 , HORVU4Hr1G013720.51 , HORVU4Hr1G013720.50 , HORVU4Hr1G013720.17 , HORVU4Hr1G013720.16 , HORVU4Hr1G013720.37 , HORVU4Hr1G013720.39 , HORVU4Hr1G013720.38 , HORVU4Hr1G013720.40 , HORVU4Hr1G013720.41 , HORVU4Hr1G013720.42 , HORVU4Hr1G013720.43 , HORVU4Hr1G013720.44 , HORVU4Hr1G013720.45 , HORVU4Hr1G013720.46 , HORVU4Hr1G013720.47 , HORVU4Hr1G013720.48 , HORVU4Hr1G013720.49 , HORVU4Hr1G013720.29
Wheat TraesCS4D02G079600 , TraesCS4D02G079600 , TraesCS4A02G234400 , TraesCS4B02G080800
Populus -


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cDNA sequences
Sobic.001G166600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
2 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
3 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
4 Sobic.009G084900 expressed protein -
5 Sobic.004G236400 AAA family ATPase, putative, expressed -
6 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
7 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
8 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
9 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
10 Sobic.006G252900 ubiquitin family protein, putative, expressed -
11 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
12 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
13 Sobic.006G217000 imidazoleglycerol-phosphate dehydratase, putative, expressed K01693: imidazoleglycerol-phosphate dehydratase
14 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
15 Sobic.003G171500 dnaJ domain containing protein, expressed -
16 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
17 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
18 Sobic.008G070500 GTP binding protein, putative, expressed -
19 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
20 Sobic.010G098200 peroxidase family protein, expressed -


Gene co-expression network
sample Sobic001G166600 Sobic001G166600 Sobic007G207200 Sobic007G207200 Sobic001G166600--Sobic007G207200 Sobic002G143500 Sobic002G143500 Sobic001G166600--Sobic002G143500 Sobic006G058100 Sobic006G058100 Sobic001G166600--Sobic006G058100 Sobic009G084900 Sobic009G084900 Sobic001G166600--Sobic009G084900 Sobic004G236400 Sobic004G236400 Sobic001G166600--Sobic004G236400 Sobic009G245800 Sobic009G245800 Sobic001G166600--Sobic009G245800 Sobic001G219600 Sobic001G219600 Sobic001G166600--Sobic001G219600 Sobic003G141500 Sobic003G141500 Sobic001G166600--Sobic003G141500 Sobic002G359400 Sobic002G359400 Sobic001G166600--Sobic002G359400 Sobic007G207200--Sobic001G166600 Sobic007G207200--Sobic001G219600 Sobic002G317200 Sobic002G317200 Sobic007G207200--Sobic002G317200 Sobic010G166400 Sobic010G166400 Sobic007G207200--Sobic010G166400 Sobic001G407700 Sobic001G407700 Sobic007G207200--Sobic001G407700 Sobic007G207200--Sobic009G084900 Sobic009G056200 Sobic009G056200 Sobic007G207200--Sobic009G056200 Sobic009G047200 Sobic009G047200 Sobic007G207200--Sobic009G047200 Sobic010G116600 Sobic010G116600 Sobic007G207200--Sobic010G116600 Sobic002G143500--Sobic001G166600 Sobic006G216800 Sobic006G216800 Sobic002G143500--Sobic006G216800 Sobic002G143500--Sobic001G219600 Sobic002G143500--Sobic006G058100 Sobic001G071400 Sobic001G071400 Sobic002G143500--Sobic001G071400 Sobic007G116200 Sobic007G116200 Sobic002G143500--Sobic007G116200 Sobic002G143500--Sobic003G141500 Sobic003G280800 Sobic003G280800 Sobic002G143500--Sobic003G280800 Sobic009G126400 Sobic009G126400 Sobic002G143500--Sobic009G126400 Sobic006G058100--Sobic002G143500 Sobic003G067100 Sobic003G067100 Sobic006G058100--Sobic003G067100 Sobic003G040000 Sobic003G040000 Sobic006G058100--Sobic003G040000 Sobic006G058100--Sobic001G166600 Sobic006G058100--Sobic004G236400 Sobic001G261573 Sobic001G261573 Sobic006G058100--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic006G058100--Sobic010G176550 Sobic004G225600 Sobic004G225600 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic010G059500 Sobic010G059500 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic001G493200 Sobic001G493200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic004G236400--Sobic006G058100 Sobic004G236400--Sobic001G166600 Sobic007G225000 Sobic007G225000 Sobic004G236400--Sobic007G225000 Sobic001G214600 Sobic001G214600 Sobic004G236400--Sobic001G214600 Sobic001G014900 Sobic001G014900 Sobic004G236400--Sobic001G014900 Sobic004G236400--Sobic002G143500 Sobic004G314000 Sobic004G314000 Sobic004G236400--Sobic004G314000 Sobic004G236400--Sobic003G067100 Sobic005G001000 Sobic005G001000 Sobic004G236400--Sobic005G001000 Sobic010G053800 Sobic010G053800 Sobic009G245800--Sobic010G053800 Sobic003G404500 Sobic003G404500 Sobic009G245800--Sobic003G404500 Sobic004G072100 Sobic004G072100 Sobic009G245800--Sobic004G072100 Sobic008G047800 Sobic008G047800 Sobic009G245800--Sobic008G047800 Sobic006G208500 Sobic006G208500 Sobic009G245800--Sobic006G208500 Sobic006G195700 Sobic006G195700 Sobic009G245800--Sobic006G195700 Sobic002G310200 Sobic002G310200 Sobic009G245800--Sobic002G310200 Sobic004G135400 Sobic004G135400 Sobic009G245800--Sobic004G135400 Sobic003G443100 Sobic003G443100 Sobic009G245800--Sobic003G443100 Sobic009G260500 Sobic009G260500 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic001G219600--Sobic002G317200 Sobic001G219600--Sobic009G047200 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic003G141500--Sobic001G219600 Sobic003G141500--Sobic008G047800 Sobic009G050900 Sobic009G050900 Sobic003G141500--Sobic009G050900 Sobic003G141500--Sobic001G493200 Sobic003G141500--Sobic002G143500 Sobic003G141500--Sobic003G443100 Sobic003G141500--Sobic009G126400 Sobic003G141500--Sobic001G071400 Sobic006G200600 Sobic006G200600 Sobic003G141500--Sobic006G200600 Sobic001G007000 Sobic001G007000 Sobic002G359400--Sobic001G007000 Sobic001G392300 Sobic001G392300 Sobic002G359400--Sobic001G392300 Sobic010G262000 Sobic010G262000 Sobic002G359400--Sobic010G262000 Sobic006G041600 Sobic006G041600 Sobic002G359400--Sobic006G041600 Sobic008G004600 Sobic008G004600 Sobic002G359400--Sobic008G004600 Sobic002G305000 Sobic002G305000 Sobic002G359400--Sobic002G305000 Sobic002G325300 Sobic002G325300 Sobic002G359400--Sobic002G325300 Sobic006G103200 Sobic006G103200 Sobic002G359400--Sobic006G103200 Sobic003G102400 Sobic003G102400 Sobic002G359400--Sobic003G102400
Octagon: transcription factors


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