Gene annotation
Transcriptome id Sobic.004G236400.2,Sobic.004G236400.1,Sobic.004G236400.3
Synonym Sb04g027890
Functional annotation AAA family ATPase, putative, expressed
UniProt A0A1Z5RNT6 , C5XYR9 , C5XYS1
Pfam PF05496
Panther DB PTHR23074 PTHR23074:SF95
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G50140 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os02g51400.1 : AAA family ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a033190
Brachypodium KQK18893 , KQK18892 , KQK18891 , KQK01925 , KQK01924 , PNT69634 , PNT69635
Barley HORVU5Hr1G104980.60 , HORVU5Hr1G104980.61 , HORVU5Hr1G104980.62 , HORVU5Hr1G104980.55 , HORVU5Hr1G104980.57 , HORVU5Hr1G104980.51 , HORVU5Hr1G104980.53 , HORVU5Hr1G104980.52 , HORVU5Hr1G104980.59 , HORVU5Hr1G104980.58 , HORVU6Hr1G075440.16 , HORVU6Hr1G075440.17 , HORVU6Hr1G075440.14 , HORVU6Hr1G075440.15 , HORVU6Hr1G075440.12 , HORVU6Hr1G075440.13 , HORVU6Hr1G075440.10 , HORVU6Hr1G075440.11 , HORVU6Hr1G075440.18 , HORVU6Hr1G075440.19 , HORVU5Hr1G104980.48 , HORVU5Hr1G104980.49 , HORVU5Hr1G104980.42 , HORVU5Hr1G104980.43 , HORVU5Hr1G104980.40 , HORVU5Hr1G104980.41 , HORVU5Hr1G104980.46 , HORVU5Hr1G104980.47 , HORVU5Hr1G104980.44 , HORVU5Hr1G104980.45 , HORVU5Hr1G104980.39 , HORVU5Hr1G104980.37 , HORVU5Hr1G104980.36 , HORVU5Hr1G104980.35 , HORVU5Hr1G104980.34 , HORVU5Hr1G104980.33 , HORVU5Hr1G104980.32 , HORVU5Hr1G104980.31 , HORVU5Hr1G104980.30 , HORVU3Hr1G072480.1 , HORVU3Hr1G072480.2 , HORVU5Hr1G104980.28 , HORVU5Hr1G104980.29 , HORVU5Hr1G104980.25 , HORVU5Hr1G104980.26 , HORVU5Hr1G104980.27 , HORVU5Hr1G104980.20 , HORVU5Hr1G104980.21 , HORVU5Hr1G104980.22 , HORVU5Hr1G104980.23 , HORVU5Hr1G104980.11 , HORVU5Hr1G104980.10 , HORVU5Hr1G104980.13 , HORVU5Hr1G104980.12 , HORVU5Hr1G104980.15 , HORVU5Hr1G104980.14 , HORVU5Hr1G104980.17 , HORVU5Hr1G104980.16 , HORVU5Hr1G104980.19 , HORVU5Hr1G104980.18 , HORVU1Hr1G020300.2 , HORVU1Hr1G020300.1 , HORVU5Hr1G104980.54 , HORVU5Hr1G104980.56 , HORVU7Hr1G037870.3 , HORVU7Hr1G037870.1 , HORVU7Hr1G037870.6 , HORVU7Hr1G037870.7 , HORVU7Hr1G037870.4 , HORVU7Hr1G037870.5 , HORVU7Hr1G037870.8 , HORVU7Hr1G037870.9 , HORVU6Hr1G038660.1 , HORVU6Hr1G075440.4 , HORVU6Hr1G075440.5 , HORVU6Hr1G075440.6 , HORVU6Hr1G075440.7 , HORVU6Hr1G075440.1 , HORVU6Hr1G075440.2 , HORVU6Hr1G075440.3 , HORVU6Hr1G075440.8 , HORVU6Hr1G075440.9 , HORVU5Hr1G104980.7 , HORVU5Hr1G104980.6 , HORVU5Hr1G104980.1 , HORVU5Hr1G104980.3 , HORVU5Hr1G104980.2 , HORVU5Hr1G104980.8 , HORVU1Hr1G005450.1 , HORVU7Hr1G037870.11 , HORVU7Hr1G037870.12 , HORVU7Hr1G037870.13 , HORVU7Hr1G037870.14 , HORVU7Hr1G037870.15 , HORVU7Hr1G037870.16 , HORVU7Hr1G037870.17 , HORVU7Hr1G037870.18 , HORVU7Hr1G037870.19 , HORVU7Hr1G037870.24 , HORVU7Hr1G037870.21 , HORVU7Hr1G037870.20 , HORVU7Hr1G037870.23 , HORVU7Hr1G037870.22 , HORVU6Hr1G075440.29 , HORVU6Hr1G075440.28 , HORVU6Hr1G075440.27 , HORVU6Hr1G075440.26 , HORVU6Hr1G075440.25 , HORVU6Hr1G075440.24 , HORVU6Hr1G075440.23 , HORVU6Hr1G075440.22 , HORVU6Hr1G075440.21 , HORVU6Hr1G075440.20
Wheat TraesCS6B02G333700 , TraesCS6D02G284600 , TraesCS6D02G284600 , TraesCS6B02G333700 , TraesCS6B02G333700 , TraesCS6D02G284600 , TraesCS7B02G089500 , TraesCS6D02G284600 , TraesCS6B02G333700 , TraesCS7D02G186200 , TraesCS6A02G305500 , TraesCS6A02G305500 , TraesCS6A02G305500 , TraesCS6A02G305500 , TraesCS7A02G184700 , TraesCS7A02G184700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
2 Sobic.001G166600 semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00145: N-acetyl-gamma-glutamyl-phosphate reductase
3 Sobic.007G225000 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
4 Sobic.001G214600 expressed protein -
5 Sobic.001G014900 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
6 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
7 Sobic.004G314000 expressed protein -
8 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
9 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
10 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
11 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
12 Sobic.001G016600 FAR1 family protein, expressed -
13 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
14 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
15 Sobic.009G094900 sugar porter, putative, expressed -
16 Sobic.001G050600 expressed protein -
17 Sobic.001G334700 OsWAK28 - OsWAK receptor-like protein kinase, expressed -
18 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
19 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
20 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase


Gene co-expression network
sample Sobic004G236400 Sobic004G236400 Sobic006G058100 Sobic006G058100 Sobic004G236400--Sobic006G058100 Sobic001G166600 Sobic001G166600 Sobic004G236400--Sobic001G166600 Sobic007G225000 Sobic007G225000 Sobic004G236400--Sobic007G225000 Sobic001G214600 Sobic001G214600 Sobic004G236400--Sobic001G214600 Sobic001G014900 Sobic001G014900 Sobic004G236400--Sobic001G014900 Sobic002G143500 Sobic002G143500 Sobic004G236400--Sobic002G143500 Sobic004G314000 Sobic004G314000 Sobic004G236400--Sobic004G314000 Sobic003G067100 Sobic003G067100 Sobic004G236400--Sobic003G067100 Sobic005G001000 Sobic005G001000 Sobic004G236400--Sobic005G001000 Sobic006G058100--Sobic002G143500 Sobic006G058100--Sobic003G067100 Sobic003G040000 Sobic003G040000 Sobic006G058100--Sobic003G040000 Sobic006G058100--Sobic001G166600 Sobic006G058100--Sobic004G236400 Sobic001G261573 Sobic001G261573 Sobic006G058100--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic006G058100--Sobic010G176550 Sobic004G225600 Sobic004G225600 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic007G207200 Sobic007G207200 Sobic001G166600--Sobic007G207200 Sobic001G166600--Sobic002G143500 Sobic001G166600--Sobic006G058100 Sobic009G084900 Sobic009G084900 Sobic001G166600--Sobic009G084900 Sobic001G166600--Sobic004G236400 Sobic009G245800 Sobic009G245800 Sobic001G166600--Sobic009G245800 Sobic001G219600 Sobic001G219600 Sobic001G166600--Sobic001G219600 Sobic003G141500 Sobic003G141500 Sobic001G166600--Sobic003G141500 Sobic002G359400 Sobic002G359400 Sobic001G166600--Sobic002G359400 Sobic007G225000--Sobic004G236400 Sobic007G225000--Sobic003G067100 Sobic005G128400 Sobic005G128400 Sobic007G225000--Sobic005G128400 Sobic007G225000--Sobic006G058100 Sobic010G094700 Sobic010G094700 Sobic007G225000--Sobic010G094700 Sobic007G212300 Sobic007G212300 Sobic007G225000--Sobic007G212300 Sobic006G049900 Sobic006G049900 Sobic007G225000--Sobic006G049900 Sobic001G352900 Sobic001G352900 Sobic007G225000--Sobic001G352900 Sobic001G016600 Sobic001G016600 Sobic007G225000--Sobic001G016600 Sobic004G260100 Sobic004G260100 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic001G214600--Sobic009G084900 Sobic010G147833 Sobic010G147833 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic004G223600 Sobic004G223600 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G219900 Sobic001G219900 Sobic001G214600--Sobic001G219900 Sobic001G493200 Sobic001G493200 Sobic001G214600--Sobic001G493200 Sobic001G194200 Sobic001G194200 Sobic001G014900--Sobic001G194200 Sobic001G014900--Sobic005G001000 Sobic007G105100 Sobic007G105100 Sobic001G014900--Sobic007G105100 Sobic003G247500 Sobic003G247500 Sobic001G014900--Sobic003G247500 Sobic003G186000 Sobic003G186000 Sobic001G014900--Sobic003G186000 Sobic007G103100 Sobic007G103100 Sobic001G014900--Sobic007G103100 Sobic002G146300 Sobic002G146300 Sobic001G014900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G014900--Sobic003G205200 Sobic010G010700 Sobic010G010700 Sobic001G014900--Sobic010G010700 Sobic002G143500--Sobic001G166600 Sobic006G216800 Sobic006G216800 Sobic002G143500--Sobic006G216800 Sobic002G143500--Sobic001G219600 Sobic002G143500--Sobic006G058100 Sobic001G071400 Sobic001G071400 Sobic002G143500--Sobic001G071400 Sobic007G116200 Sobic007G116200 Sobic002G143500--Sobic007G116200 Sobic002G143500--Sobic003G141500 Sobic003G280800 Sobic003G280800 Sobic002G143500--Sobic003G280800 Sobic009G126400 Sobic009G126400 Sobic002G143500--Sobic009G126400 Sobic010G139000 Sobic010G139000 Sobic004G314000--Sobic010G139000 Sobic005G008800 Sobic005G008800 Sobic004G314000--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic004G314000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic004G314000--Sobic010G279450 Sobic004G242400 Sobic004G242400 Sobic004G314000--Sobic004G242400 Sobic010G206900 Sobic010G206900 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G234900 Sobic003G234900 Sobic003G067100--Sobic003G234900 Sobic001G102500 Sobic001G102500 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic005G001000--Sobic001G194200 Sobic002G008900 Sobic002G008900 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic004G291900 Sobic004G291900 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic008G001200 Sobic008G001200 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic009G256400 Sobic009G256400 Sobic005G001000--Sobic009G256400
Octagon: transcription factors


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